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    LINC02331 long intergenic non-protein coding RNA 2331 [ Homo sapiens (human) ]

    Gene ID: 105370503, updated on 10-Oct-2023

    Summary

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    Official Symbol
    LINC02331provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2331provided by HGNC
    Primary source
    HGNC:HGNC:53251
    See related
    Ensembl:ENSG00000235269 AllianceGenome:HGNC:53251
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in gall bladder (RPKM 2.6) and salivary gland (RPKM 0.2) See more
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    Genomic context

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    Location:
    14q22.2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (53684997..53850826, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (47893251..48059061, complement)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370504 Neighboring gene uncharacterized LOC124903316 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr14:54074633-54075832 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5754 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8404 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8405 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8406 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5755 Neighboring gene RPS3A pseudogene 46 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8407 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr14:54316803-54318002 Neighboring gene uncharacterized LOC107984676 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8408 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr14:54409816-54410443 Neighboring gene enhancer downstream of BMP4 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:54412534-54413066 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:54413067-54413597 Neighboring gene microRNA 5580

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    Genotypes

    General gene information

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    Clone Names

    • AL162759.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_184212.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL162759, AL163953

    2. NR_184213.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL162759, AL163953

    3. NR_184214.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL162759, AL163953

    4. NR_184215.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL162759, AL163953

    5. NR_184216.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL162759, AL163953

    6. NR_184217.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL162759, AL163953

    7. NR_184218.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL162759, AL163953

    8. NR_184219.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL162759, AL163953
      Related
      ENST00000418927.2

    9. NR_184220.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL162759, AL163953

    10. NR_184221.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL162759, AL163953

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      53684997..53850826 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      47893251..48059061 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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