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    msc musculin [ Danio rerio (zebrafish) ]

    Gene ID: 556396, updated on 12-Sep-2024

    Summary

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    Gene symbol
    msc
    Gene description
    musculin
    See related
    Ensembl:ENSDARG00000110016
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    human mouse all
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    Genomic context

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    See msc in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (13735644..13739717)
    105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (13591413..13595298)

    Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137489217 Neighboring gene potassium voltage-gated channel subfamily B member 2b Neighboring gene transient receptor potential cation channel, subfamily A, member 1b Neighboring gene EYA transcriptional coactivator and phosphatase 1 Neighboring gene uncharacterized LOC137489283

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Essential roles of basic helix-loop-helix transcription factors, Capsulin and Musculin, during craniofacial myogenesis of zebrafish. Lee GH, et al. Cell Mol Life Sci, 2011 Dec. PMID 21347725, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Musculin has an essential role in zebrafish craniofacial myogenesis.
      Title: Essential roles of basic helix-loop-helix transcription factors, Capsulin and Musculin, during craniofacial myogenesis of zebrafish.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    Homology

    General protein information

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    Preferred Names
    musculin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007135.7 Reference GRCz11 Primary Assembly

      Range
      13735644..13739717
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_679187.10 → XP_684279.3  musculin isoform X1

      UniProtKB/TrEMBL
      A0A2R8QBT6, A0A8N7UUY4
      Related
      ENSDARP00000150948.1, ENSDART00000184267.1
      Conserved Domains (1) summary
      smart00353
      Location:68 → 120
      HLH; helix loop helix domain

    2. XM_068217173.1 → XP_068073274.1  musculin isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

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