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    ear ENL/AF9-related super elongation complex transcription factor [ Halyomorpha halys (brown marmorated stink bug) ]

    Gene ID: 106683272, updated on 11-Oct-2024

    Summary

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    Gene symbol
    ear
    Gene description
    ENL/AF9-related super elongation complex transcription factor
    See related
    EnsemblRapid:LOC106683272
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Halyomorpha halys
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera; Panheteroptera; Pentatomomorpha; Pentatomoidea; Pentatomidae; Pentatominae; Halyomorpha
    Orthologs
    fruit fly all
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    Genomic context

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    See ear in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_07 current Hhal_1.1 (GCF_000696795.3) Unplaced Scaffold NW_027104738.1 (206517..222005, complement)
    100 previous assembly Hhal_1.0 (GCF_000696795.1) Unplaced Scaffold NW_014466891.1 (209584..221809, complement)

    NW_027104738.1Genomic Context describing neighboring genes Neighboring gene TATA box-binding protein-associated factor RNA polymerase I subunit C-like Neighboring gene mitochondrial import inner membrane translocase subunit TIM50-C Neighboring gene uncharacterized LOC106683276 Neighboring gene putative ATP-dependent RNA helicase Dbp73D

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Rapid transcriptome sequencing of an invasive pest, the brown marmorated stink bug Halyomorpha halys. Ioannidis P, et al. BMC Genomics, 2014 Aug 29. PMID 25168586, Free PMC Article
    2. Transcriptome of the invasive brown marmorated stink bug, Halyomorpha halys (Stål) (Heteroptera: Pentatomidae). Sparks ME, et al. PLoS One, 2014. PMID 25386688, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables lysine-acetylated histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription elongation factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein AF-9
    Names
    ENL/AF9-related

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000696795.3-RS_2024_07

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Hhal_1.1 Primary Assembly

    Genomic

    1. NW_027104738.1 Reference Hhal_1.1 Primary Assembly

      Range
      206517..222005 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_067044890.1 → XP_066900991.1  protein AF-9 isoform X2

    2. XM_024359336.2 → XP_024215104.1  protein AF-9 isoform X1

      Related
      XP_024215104.1
      Conserved Domains (1) summary
      pfam03366
      Location:29 → 109
      YEATS; YEATS family
    Nucleotide Protein
    Heading Accession and Version

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