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    Ccdc149 coiled-coil domain containing 149 [ Mus musculus (house mouse) ]

    Gene ID: 100503884, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Ccdc149provided by MGI
    Official Full Name
    coiled-coil domain containing 149provided by MGI
    Primary source
    MGI:MGI:2685293
    See related
    Ensembl:ENSMUSG00000045790 AllianceGenome:MGI:2685293
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm447
    Summary
    Orthologous to human CCDC149 (coiled-coil domain containing 149). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in frontal lobe adult (RPKM 7.3), cortex adult (RPKM 7.2) and 19 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Ccdc149 in Genome Data Viewer
    Location:
    5 C1; 5 27.94 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (52531993..52629018, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (52374651..52471578, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA C130083M11 gene Neighboring gene STARR-seq mESC enhancer starr_13058 Neighboring gene superoxide dismutase 3, extracellular Neighboring gene predicted gene 3519 Neighboring gene STARR-seq mESC enhancer starr_13063 Neighboring gene STARR-seq mESC enhancer starr_13064 Neighboring gene leucine-rich repeat LGI family, member 2 Neighboring gene predicted gene 5866

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
    2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC32324

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 149

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001256059.1 → NP_001242988.1  coiled-coil domain-containing protein 149 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC102735
      Consensus CDS
      CCDS57343.1
      UniProtKB/TrEMBL
      F6V035
      Related
      ENSMUSP00000062411.6, ENSMUST00000059428.7
      Conserved Domains (2) summary
      pfam09789
      Location:21 → 333
      DUF2353; Uncharacterized coiled-coil protein (DUF2353)
      cl00459
      Location:86 → 206
      MIT_CorA-like; metal ion transporter CorA-like divalent cation transporter superfamily

    2. NM_001379231.1 → NP_001366160.1  coiled-coil domain-containing protein 149 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC102735
      Conserved Domains (1) summary
      pfam09789
      Location:21 → 333
      DUF2353; Uncharacterized coiled-coil protein (DUF2353)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      52531993..52629018 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036164685.1 → XP_036020578.1  coiled-coil domain-containing protein 149 isoform X1

      Conserved Domains (1) summary
      pfam09789
      Location:21 → 320
      DUF2353; Uncharacterized coiled-coil protein (DUF2353)

    2. XM_036164686.1 → XP_036020579.1  coiled-coil domain-containing protein 149 isoform X2

      Conserved Domains (1) summary
      pfam09789
      Location:21 → 320
      DUF2353; Uncharacterized coiled-coil protein (DUF2353)

    3. XM_036164687.1 → XP_036020580.1  coiled-coil domain-containing protein 149 isoform X3

      UniProtKB/TrEMBL
      A0A1D5RM99
      Related
      ENSMUSP00000148688.2, ENSMUST00000213027.2
      Conserved Domains (1) summary
      pfam09789
      Location:1 → 121
      DUF2353; Uncharacterized coiled-coil protein (DUF2353)
    Nucleotide Protein Strain
    Heading Accession and Version

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