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    4930444P10Rik RIKEN cDNA 4930444P10 gene [ Mus musculus (house mouse) ]

    Gene ID: 75799, updated on 2-Nov-2024

    Summary

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    Official Symbol
    4930444P10Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4930444P10 geneprovided by MGI
    Primary source
    MGI:MGI:1923049
    See related
    Ensembl:ENSMUSG00000067795 AllianceGenome:MGI:1923049
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human C8orf89 (chromosome 8 open reading frame 89). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in testis adult (RPKM 15.0) and CNS E18 (RPKM 0.7) See more
    Orthologs
    human all
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    Genomic context

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    See 4930444P10Rik in Genome Data Viewer
    Location:
    1 A3; 1 4.94 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (16136198..16163549, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (16065974..16093345, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_00332 Neighboring gene predicted gene, 31523 Neighboring gene STARR-seq mESC enhancer starr_00334 Neighboring gene STARR-seq mESC enhancer starr_00335 Neighboring gene predicted gene 7634 Neighboring gene STARR-seq mESC enhancer starr_00336 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:16094431-16094614 Neighboring gene ribosomal protein L7 Neighboring gene retinol dehydrogenase 10 (all-trans)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    putative uncharacterized protein C8orf89 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001243238.2 → NP_001230167.1  putative uncharacterized protein C8orf89 homolog

      See identical proteins and their annotated locations for NP_001230167.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an exon in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AK015384, BB020198, BU582852
      Consensus CDS
      CCDS56622.1
      UniProtKB/TrEMBL
      D3YUR1, F6QJK4, J3QPK3
      Related
      ENSMUSP00000119257.3, ENSMUST00000151004.2
      Conserved Domains (1) summary
      pfam17690
      Location:1 → 153
      DUF5537; Family of unknown function (DUF5537)

    2. NM_001305227.1 → NP_001292156.1  putative uncharacterized protein C8orf89 homolog

      See identical proteins and their annotated locations for NP_001292156.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC162442, AK015384
      Consensus CDS
      CCDS56622.1
      UniProtKB/TrEMBL
      D3YUR1, F6QJK4, J3QPK3
      Related
      ENSMUSP00000137853.2, ENSMUST00000145070.8
      Conserved Domains (1) summary
      pfam17690
      Location:1 → 153
      DUF5537; Family of unknown function (DUF5537)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      16136198..16163549 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006495584.5 → XP_006495647.1  putative uncharacterized protein C8orf89 homolog isoform X3

      Conserved Domains (1) summary
      pfam17690
      Location:1 → 99
      DUF5537; Family of unknown function (DUF5537)

    2. XM_030243351.2 → XP_030099211.1  putative uncharacterized protein C8orf89 homolog isoform X2

      UniProtKB/TrEMBL
      D3YUR1, F6QJK4, J3QPK3
      Conserved Domains (1) summary
      pfam17690
      Location:1 → 153
      DUF5537; Family of unknown function (DUF5537)

    3. XM_030243353.1 → XP_030099213.1  putative uncharacterized protein C8orf89 homolog isoform X2

      UniProtKB/TrEMBL
      D3YUR1, F6QJK4, J3QPK3
      Conserved Domains (1) summary
      pfam17690
      Location:1 → 153
      DUF5537; Family of unknown function (DUF5537)

    4. XM_006495582.2 → XP_006495645.1  putative uncharacterized protein C8orf89 homolog isoform X1

      Conserved Domains (1) summary
      pfam17690
      Location:19 → 171
      DUF5537; Family of unknown function (DUF5537)
    Nucleotide Protein Strain
    Heading Accession and Version

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