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    rpsJ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947816, updated on 24-Aug-2024

    Summary

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    Official Symbol
    rpsJ
    Primary source
    ASAP:ABE-0010862
    Locus tag
    b3321
    See related
    ECOCYC:EG10909
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3308; nusE
    Summary
    The S10 protein (NusE) is a component of the 30S subunit of the ribosome and, in a complex with NusB, plays a role in transcription antitermination. [More information is available at EcoCyc: EG10909].
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    Genomic context

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    Sequence:
    NC_000913.3 (3452959..3453270, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene 50S ribosomal subunit protein L23 Neighboring gene 50S ribosomal subunit protein L4 Neighboring gene 50S ribosomal subunit protein L3 Neighboring gene putative general secretion pathway protein B Neighboring gene Type II secretion system protein GspA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Exploring RNA polymerase regulation by NMR spectroscopy. Drögemüller J, et al. Sci Rep, 2015 Jun 4. PMID 26043358, Free PMC Article
    2. Transcription by moonlight: structural basis of an extraribosomal activity of ribosomal protein S10. Weisberg RA. Mol Cell, 2008 Dec 26. PMID 19111651, Free PMC Article
    3. Proteins shared by the transcription and translation machines. Squires CL, et al. Annu Rev Microbiol, 2000. PMID 11018144
    4. An amber mutation in a ribosomal protein gene: ineffective suppression stimulates operon-specific transcription. Delcuve G, et al. J Bacteriol, 1981 Sep. PMID 7024255, Free PMC Article
    5. The primary structure of protein S10 from the small ribosomal subunit of Escherichia coli. Yaguchi M, et al. FEBS Lett, 1980 Nov 17. PMID 7007073

    See all (62) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Conservation of putative NusB/E binding sites upstream of Nus factor genes suggests that Nus factor autoregulation occurs in many bacterial species.
      Title: Identification of regulatory targets for the bacterial Nus factor complex.
    2. NusG forms a complex with Rho or with NusE; because NusG amino-terminal domain contacts RNA polymerase & NusG carboxy-terminal domain interaction site of NusE is accessible in the ribosomal 30S subunit, NusG may be link between transcription & translation
      Title: A NusE:NusG complex links transcription and translation.
    3. N-terminus verified by Edman degradation on complete protein
      Title: Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12.
    4. NusB and NusE (S10) proteins binding to boxA RNA nucleates the formation of the antitermination complex involved in controlling rRNA transcription in Escherichia coli
      Title: Assembly of an RNA-protein complex. Binding of NusB and NusE (S10) proteins to boxA RNA nucleates the formation of the antitermination complex involved in controlling rRNA transcription in Escherichia coli.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables tRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transcription antitermination factor activity, RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic translation NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription elongation NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within transcription antitermination IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in transcription antitermination IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in transcription antitermination IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of cytosolic small ribosomal subunit IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of cytosolic small ribosomal subunit IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    30S ribosomal subunit protein S10

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3452959..3453270 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417780.1 30S ribosomal subunit protein S10 [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417780.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A077K5Q0
      Conserved Domains (1) summary
      PRK00596
      Location:1 → 102
      rpsJ; 30S ribosomal protein S10; Reviewed
    Nucleotide Protein
    Heading Accession and Version

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