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    ybcL periplasmic protein YbcL [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945165, updated on 6-Oct-2023

    Summary

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    Gene symbol
    ybcL
    Gene description
    periplasmic protein YbcL
    Primary source
    ASAP:ABE-0001869
    Locus tag
    b0545
    See related
    ECOCYC:G6301
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0536
    Summary
    YbcL may be a kinase regulator. [More information is available at EcoCyc: G6301].
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    Genomic context

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    Sequence:
    NC_000913.3 (570893..571444)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein YlcJ Neighboring gene putative recombinase YbcK Neighboring gene putative DNA-binding transcriptional regulator Neighboring gene uncharacterized protein YlcH Neighboring gene DNA base-flipping protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Bacterial lysis liberates the neutrophil migration suppressor YbcL from the periplasm of uropathogenic Escherichia coli. Lau ME, et al. Infect Immun, 2014 Dec. PMID 25183735, Free PMC Article
    2. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    3. Crystal structures of YBHB and YBCL from Escherichia coli, two bacterial homologues to a Raf kinase inhibitor protein. Serre L, et al. J Mol Biol, 2001 Jul 13. PMID 11439028
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. YbcL(UTI) was liberated during bacterial death, which was augmented upon exposure to bladder epithelial cells.
      Title: Bacterial lysis liberates the neutrophil migration suppressor YbcL from the periplasm of uropathogenic Escherichia coli.
    2. N-terminus verified by Edman degradation on mature peptide
      Title: Crystal structures of YBHB and YBCL from Escherichia coli, two bacterial homologues to a Raf kinase inhibitor protein.
    Submit: New GeneRIF Correction

    General gene information

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    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables enzyme inhibitor activity RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in outer membrane-bounded periplasmic space IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in periplasmic space IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    periplasmic protein YbcL

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      570893..571444
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415077.1 periplasmic protein YbcL [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415077.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S0FS42
      Conserved Domains (1) summary
      PRK09818
      Location:1 → 183
      PRK09818; kinase inhibitor
    Nucleotide Protein
    Heading Accession and Version

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