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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_029752.2 RefSeqGene
- Range
-
396081..578699
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001243466.2 → NP_001230395.1 stAR-related lipid transfer protein 13 isoform 5
See identical proteins and their annotated locations for NP_001230395.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) contains an alternate 5' terminal exon, and differs at the 3' end compared to variant 1. This results in a shorter isoform (5) with distinct N- and C- termini compared to isoform 1.
- Source sequence(s)
-
AK308453, AL139187, BC046563
- UniProtKB/TrEMBL
-
B3KRK6
- Conserved Domains (2) summary
-
- cd09592
Location:49 → 112
- SAM_DLC2; SAM domain of STARD13-like subfamily
- cl02570
Location:649 → 686
- RhoGAP; RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when ...
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NM_001243474.2 → NP_001230403.1 stAR-related lipid transfer protein 13 isoform 6
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) contains an alternate 5' terminal exon, and differs at the 3' end compared to variant 1. This results in translation initiation from an in-frame downstream AUG, and an isoform (6) with a shorter N-terminus, and a distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
AK091804, AK308453, BC046563, BP233049
- UniProtKB/TrEMBL
-
B3KRK6
- Conserved Domains (1) summary
-
- cl02570
Location:539 → 642
- RhoGAP; RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when ...
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NM_001243476.3 → NP_001230405.1 stAR-related lipid transfer protein 13 isoform 4
See identical proteins and their annotated locations for NP_001230405.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks a portion of the 5' coding region and contains multiple alternate 5' exons, and initiates initiates translation at an alternate start codon, compared to variant 1. This results in a shorter isoform (4) with a distinct N-terminus compared to isoform 1.
- Source sequence(s)
-
AA256386, AK308453, AY082589, BX647695, CB163673, DA312208, DB449764
- UniProtKB/Swiss-Prot
-
Q9Y3M8
- Conserved Domains (3) summary
-
- cd08909
Location:865 → 1069
- START_STARD13-like; C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain
- cd09592
Location:22 → 85
- SAM_DLC2; SAM domain of STARD13-like subfamily
- cd04375
Location:622 → 839
- RhoGAP_DLC1; RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a ...
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NM_001411014.1 → NP_001397943.1 stAR-related lipid transfer protein 13 isoform 7
Status: REVIEWED
- Source sequence(s)
-
AL138999, AL139187
- Consensus CDS
-
CCDS91800.1
- UniProtKB/TrEMBL
-
H3BRG5
- Related
- ENSP00000456233.2, ENST00000567873.2
-
NM_052851.3 → NP_443083.1 stAR-related lipid transfer protein 13 isoform 3
See identical proteins and their annotated locations for NP_443083.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) contains an alternate 5' terminal exon compared to variant 1. This results in translation initiation from an in-frame downstream AUG, and an isoform (3, also known as DLC2gamma) with a shorter N-terminus compared to isoform 1.
- Source sequence(s)
-
AA256386, AL049801, AY082590, AY082591, AY366448, BP233049, CB163673
- Consensus CDS
-
CCDS9350.1
- UniProtKB/TrEMBL
-
B2R789
- Related
- ENSP00000382300.3, ENST00000399365.7
- Conserved Domains (2) summary
-
- cd08909
Location:782 → 986
- START_STARD13-like; C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain
- cd04375
Location:539 → 756
- RhoGAP_DLC1; RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a ...
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NM_178006.4 → NP_821074.1 stAR-related lipid transfer protein 13 isoform 1
See identical proteins and their annotated locations for NP_821074.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1, also known as DLC2alpha).
- Source sequence(s)
-
AA256386, AY082589, AY082590, AY366448, CB163673, DC402824
- Consensus CDS
-
CCDS9348.1
- UniProtKB/Swiss-Prot
- A2A309, A2A310, Q5HYH1, Q5TAE3, Q6UN61, Q86TP6, Q86WQ3, Q86XT1, Q9Y3M8
- Related
- ENSP00000338785.4, ENST00000336934.10
- Conserved Domains (4) summary
-
- cd08909
Location:900 → 1104
- START_STARD13-like; C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain
- cd09592
Location:57 → 120
- SAM_DLC2; SAM domain of STARD13-like subfamily
- smart00454
Location:61 → 120
- SAM; Sterile alpha motif
- cd04375
Location:657 → 874
- RhoGAP_DLC1; RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a ...
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NM_178007.3 → NP_821075.1 stAR-related lipid transfer protein 13 isoform 2
See identical proteins and their annotated locations for NP_821075.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) contains an alternate 5' terminal exon compared to variant 1. This results in a shorter isoform (2, also known as DLC2beta) with a distinct N-terminus compared to isoform 1.
- Source sequence(s)
-
AA256386, AL139187, AY082590, AY366448, CB163673
- Consensus CDS
-
CCDS9349.1
- UniProtKB/Swiss-Prot
-
Q9Y3M8
- Related
- ENSP00000255486.4, ENST00000255486.8
- Conserved Domains (4) summary
-
- cd08909
Location:892 → 1096
- START_STARD13-like; C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain
- cd09592
Location:49 → 112
- SAM_DLC2; SAM domain of STARD13-like subfamily
- smart00454
Location:53 → 112
- SAM; Sterile alpha motif
- cd04375
Location:649 → 866
- RhoGAP_DLC1; RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
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NC_000013.11 Reference GRCh38.p14 Primary Assembly
- Range
-
33103137..33676794 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017020835.3 → XP_016876324.1 stAR-related lipid transfer protein 13 isoform X2
- Conserved Domains (3) summary
-
- cd08909
Location:865 → 1069
- START_STARD13-like; C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain
- cd09592
Location:22 → 85
- SAM_DLC2; SAM domain of STARD13-like subfamily
- cd04375
Location:622 → 839
- RhoGAP_DLC1; RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a ...
-
XM_047430759.1 → XP_047286715.1 stAR-related lipid transfer protein 13 isoform X1
-
XM_024449429.2 → XP_024305197.1 stAR-related lipid transfer protein 13 isoform X2
- Conserved Domains (3) summary
-
- cd08909
Location:865 → 1069
- START_STARD13-like; C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain
- cd09592
Location:22 → 85
- SAM_DLC2; SAM domain of STARD13-like subfamily
- cd04375
Location:622 → 839
- RhoGAP_DLC1; RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a ...
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XM_047430760.1 → XP_047286716.1 stAR-related lipid transfer protein 13 isoform X2
Alternate T2T-CHM13v2.0
Genomic
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NC_060937.1 Alternate T2T-CHM13v2.0
- Range
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32320452..32894146 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054375159.1 → XP_054231134.1 stAR-related lipid transfer protein 13 isoform X2
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XM_054375157.1 → XP_054231132.1 stAR-related lipid transfer protein 13 isoform X1
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XM_054375158.1 → XP_054231133.1 stAR-related lipid transfer protein 13 isoform X2
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_178008.1: Suppressed sequence
- Description
- NM_178008.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.