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    [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843636, updated on 22-Aug-2024

    Summary

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    Primary source
    Araport:AT1G73050
    Locus tag
    AT1G73050
    See related
    TAIR:AT1G73050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3N23.25; F3N23_25
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (27476565..27478534, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene SNF7 family protein Neighboring gene ncRNA Neighboring gene Mannose-binding lectin superfamily protein Neighboring gene Low PSII Accumulation 3 Neighboring gene uncharacterized protein Neighboring gene Leucine-rich repeat family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular analysis of (R)-(+)-mandelonitrile lyase microheterogeneity in black cherry. Hu Z, et al. Plant Physiol, 1999 Apr. PMID 10198113, Free PMC Article
    2. Sequencing, genomic organization, and preliminary promoter analysis of a black cherry (R)-(+)-mandelonitrile lyase gene. Hu Z, et al. Plant Physiol, 1997 Dec. PMID 9414550, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables flavin adenine dinucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mandelonitrile lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity, acting on CH-OH group of donors IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cyanide biosynthetic process TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within defense response TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Glucose-methanol-choline (GMC) oxidoreductase family protein
    NP_177448.1
    • Glucose-methanol-choline (GMC) oxidoreductase family protein; FUNCTIONS IN: oxidoreductase activity, acting on CH-OH group of donors, FAD binding; INVOLVED IN: cyanide biosynthetic process, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase (InterPro:IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867); BEST Arabidopsis thaliana protein match is: Glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT1G12570.1); Has 10851 Blast hits to 10547 proteins in 1106 species: Archae - 4; Bacteria - 3939; Metazoa - 853; Fungi - 1597; Plants - 293; Viruses - 12; Other Eukaryotes - 4153 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      27476565..27478534 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105963.1 → NP_177448.1  Glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177448.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1PFE0, Q9SSM2
      UniProtKB/TrEMBL
      A0A5S9WTW7, A0A654ENG5
      Conserved Domains (1) summary
      PLN02785
      Location:30 → 551
      PLN02785; Protein HOTHEAD
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SSM2.1

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