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    [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843214, updated on 22-Aug-2024

    Summary

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    Primary source
    Araport:AT1G68820
    Locus tag
    AT1G68820
    See related
    TAIR:AT1G68820
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14K14.7; F14K14_7
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    13
    Sequence:
    Chromosome: 1; NC_003070.9 (25865471..25869029)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene TCP domain protein 12 Neighboring gene ncRNA Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene ROTUNDIFOLIA like 15 Neighboring gene Serine/Threonine kinase domain protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtPPRT1, an E3 Ubiquitin Ligase, Enhances the Thermotolerance in Arabidopsis. Liu Y, et al. Plants (Basel), 2020 Aug 21. PMID 32825569, Free PMC Article
    2. Expression Pattern and Function Analysis of AtPPRT1, a Novel Negative Regulator in ABA and Drought Stress Responses in Arabidopsis. Pei L, et al. Int J Mol Sci, 2019 Jan 17. PMID 30658512, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001334384.1
    NM_105556.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to heat IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within response to water deprivation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    colocalizes_with mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Transmembrane Fragile-X-F-associated protein
    NP_564945.1
    • Transmembrane Fragile-X-F-associated protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane Fragile-X-F-associated protein (InterPro:IPR019396), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Transmembrane Fragile-X-F-associated protein (TAIR:AT1G73950.1); Has 2761 Blast hits to 2715 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 1602; Fungi - 4; Plants - 542; Viruses - 213; Other Eukaryotes - 400 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25865471..25869029
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334382.1 → NP_001323371.1  Transmembrane Fragile-X-F-associated protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AWW9, A0A7G2E7I7

    2. NM_001334383.1 → NP_001323372.1  Transmembrane Fragile-X-F-associated protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AWU2, A0A7G2E7I7

    3. NM_105556.5 → NP_564945.1  Transmembrane Fragile-X-F-associated protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564945.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W3P8, A0A7G2E7I7, Q94K50
      Conserved Domains (2) summary
      pfam10269
      Location:35 → 285
      Tmemb_185A; Transmembrane Fragile-X-F protein
      pfam13920
      Location:417 → 462
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

    4. NM_001334384.1 → NP_001323373.1  Transmembrane Fragile-X-F-associated protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AX05, A0A7G2E7I7
      Conserved Domains (2) summary
      pfam10269
      Location:35 → 291
      Tmemb_185A; Transmembrane Fragile-X-F protein
      pfam13920
      Location:423 → 468
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
    Nucleotide Protein
    Heading Accession and Version

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