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    AT1G63110 GPI transamidase subunit PIG-U [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842615, updated on 15-Oct-2023

    Summary

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    Gene symbol
    AT1G63110
    Gene description
    GPI transamidase subunit PIG-U
    Primary source
    Araport:AT1G63110
    Locus tag
    AT1G63110
    See related
    TAIR:AT1G63110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F16M19.3; F16M19_3
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    Genomic context

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    See AT1G63110 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Sequence:
    Chromosome: 1; NC_003070.9 (23404688..23408119)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene GRAS family transcription factor Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene RHOMBOID-like 2 Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_104989.4
    NM_180638.4
    NM_202346.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in attachment of GPI anchor to protein IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of GPI-anchor transamidase complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    GPI transamidase subunit PIG-U
    NP_176499.2
    • GPI transamidase subunit PIG-U; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GPI transamidase subunit PIG-U (InterPro:IPR009600); BEST Arabidopsis thaliana protein match is: GPI transamidase subunit PIG-U (TAIR:AT1G12730.2); Has 343 Blast hits to 337 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 121; Plants - 55; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
    NP_850969.2
    • GPI transamidase subunit PIG-U; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GPI transamidase subunit PIG-U (InterPro:IPR009600); BEST Arabidopsis thaliana protein match is: GPI transamidase subunit PIG-U (TAIR:AT1G12730.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_974075.1
    • GPI transamidase subunit PIG-U; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GPI transamidase subunit PIG-U (InterPro:IPR009600); BEST Arabidopsis thaliana protein match is: GPI transamidase subunit PIG-U (TAIR:AT1G12730.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      23404688..23408119
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180638.4 → NP_850969.2  GPI transamidase subunit PIG-U [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850969.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WKJ3, F4I1Z0
      Conserved Domains (1) summary
      pfam06728
      Location:18 → 435
      PIG-U; GPI transamidase subunit PIG-U

    2. NM_104989.4 → NP_176499.2  GPI transamidase subunit PIG-U [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176499.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8VZB3
      Conserved Domains (1) summary
      pfam06728
      Location:33 → 363
      PIG-U; GPI transamidase subunit PIG-U

    3. NM_202346.2 → NP_974075.1  GPI transamidase subunit PIG-U [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974075.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WKJ3, B9DFB5
      Conserved Domains (1) summary
      pfam06728
      Location:1 → 373
      PIG-U; GPI transamidase subunit PIG-U
    Nucleotide Protein
    Heading Accession and Version

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