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    UBC20 ubiquitin-conjugating enzyme 20 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841471, updated on 18-Sep-2024

    Summary

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    Official Symbol
    UBC20
    Official Full Name
    ubiquitin-conjugating enzyme 20
    Primary source
    TAIR:AT1G50490
    Locus tag
    AT1G50490
    See related
    Araport:AT1G50490
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11F12.16; ubiquitin-conjugating enzyme 20
    Summary
    Encodes one of two ubiquitin-conjugating enzymes belonging to the E2-C gene family (the other being UBC19). Transcript is always found in diving cells, but also in other non-dividing cells.
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    Genomic context

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    See UBC20 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (18704805..18706657, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene hexokinase-like 1 Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene 10-formyltetrahydrofolate synthetase Neighboring gene Membrane trafficking VPS53 family protein Neighboring gene indigoidine synthase A family protein Neighboring gene cytochrome P450, family 705, subfamily A, polypeptide 27 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular characterization of plant ubiquitin-conjugating enzymes belonging to the UbcP4/E2-C/UBCx/UbcH10 gene family. Criqui MC, et al. Plant Physiol, 2002 Nov. PMID 12427990, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_103932.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin conjugating enzyme activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ubiquitin-protein transferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ubiquitin-conjugating enzyme 20
    NP_564572.1
    • ubiquitin-conjugating enzyme 20 (UBC20); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme E2 H10 (InterPro:IPR015582), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme19 (TAIR:AT3G20060.1); Has 10004 Blast hits to 9989 proteins in 393 species: Archae - 0; Bacteria - 0; Metazoa - 4460; Fungi - 2092; Plants - 1828; Viruses - 23; Other Eukaryotes - 1601 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18704805..18706657 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103932.4 → NP_564572.1  ubiquitin-conjugating enzyme 20 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564572.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L7T3, Q8L8L3, Q9C6Q4, Q9LPS2
      UniProtKB/TrEMBL
      A0A5S9WNP4, A0A654EIZ0
      Conserved Domains (1) summary
      pfam00179
      Location:39 → 175
      UQ_con; Ubiquitin-conjugating enzyme
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L7T3.1

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