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    NPSN12 Putative plant snare 12 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841244, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NPSN12
    Official Full Name
    Putative plant snare 12
    Primary source
    TAIR:AT1G48240
    Locus tag
    AT1G48240
    See related
    Araport:AT1G48240
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATNPSN12; F21D18.4; novel plant snare 12
    Summary
    member of NPSN Gene Family
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    Genomic context

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    See NPSN12 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (17808988..17812106, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene Protein kinase superfamily protein Neighboring gene nodulin MtN21 /EamA-like transporter family protein Neighboring gene pseudo Neighboring gene CBL-interacting protein kinase 17

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812
    2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    NM_001333315.1
    NM_103721.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of SNARE complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    Putative plant snare 12
    NP_175258.2
    • novel plant snare 12 (NPSN12); FUNCTIONS IN: protein transporter activity; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: novel plant snare 13 (TAIR:AT3G17440.1); Has 462 Blast hits to 462 proteins in 143 species: Archae - 6; Bacteria - 52; Metazoa - 98; Fungi - 25; Plants - 137; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17808988..17812106 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103721.5 → NP_175258.2  Putative plant snare 12 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175258.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LNH6, Q9SX59
      UniProtKB/TrEMBL
      A0A178WLK0, A0A384L1Z9, A0A7G2ELJ3, Q541Y4
      Conserved Domains (1) summary
      cd15861
      Location:145 → 207
      SNARE_SNAP25N_23N_29N_SEC9N; N-terminal SNARE motif of SNAP25, SNAP23, SNAP29, and SEC9

    2. NM_001333315.1 → NP_001323414.1  Putative plant snare 12 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AX23
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LNH6.1

    Gene LinkOut

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