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    PPPDE putative thiol peptidase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841185, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PPPDE putative thiol peptidase family protein
    Primary source
    TAIR:AT1G47740
    Locus tag
    AT1G47740
    See related
    Araport:AT1G47740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T2E6.19; T2E6_19
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (17566511..17569297)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Primosome PriB/single-strand DNA-binding protein Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene peroxin 11A Neighboring gene AGAMOUS-like 102 Neighboring gene F-box and associated interaction domains-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001333283.1
    NM_103667.3
    NM_202258.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PPPDE putative thiol peptidase family protein
    NP_564513.1
    • PPPDE putative thiol peptidase family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: PPPDE putative thiol peptidase family protein (TAIR:AT5G25170.1); Has 836 Blast hits to 836 proteins in 174 species: Archae - 0; Bacteria - 2; Metazoa - 222; Fungi - 83; Plants - 351; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).
    NP_973987.1
    • PPPDE putative thiol peptidase family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: PPPDE putative thiol peptidase family protein (TAIR:AT5G25170.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17566511..17569297
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103667.3 → NP_564513.1  PPPDE putative thiol peptidase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564513.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1V3, A0A384KDS9, Q8RXP3, Q9FZF0
      Conserved Domains (1) summary
      pfam05903
      Location:69 → 206
      Peptidase_C97; PPPDE putative peptidase domain

    2. NM_001333283.1 → NP_001322435.1  PPPDE putative thiol peptidase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1V3, A0A384KDS9, Q8RXP3, Q9FZF0
      Conserved Domains (1) summary
      pfam05903
      Location:69 → 206
      Peptidase_C97; PPPDE putative peptidase domain

    3. NM_202258.3 → NP_973987.1  PPPDE putative thiol peptidase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973987.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1V3, A0A384KDS9, Q8RXP3, Q9FZF0
      Conserved Domains (1) summary
      pfam05903
      Location:69 → 206
      Peptidase_C97; PPPDE putative peptidase domain
    Nucleotide Protein
    Heading Accession and Version

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