[Arabidopsis thaliana (thale cress)] - Gene

Summary

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Primary source: Araport:AT1G26190
Locus tag: AT1G26190
See related: TAIR:AT1G26190
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: AtTTM2; F28B23.13; F28B23_13; triphosphate tunnel metalloenzyme 2; TTM2
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 11

Sequence:: Chromosome: 1; NC_003070.9 (9057095..9061140, complement)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The studies show that two TTMs, AtTTM1 and AtTTM2, display the same biochemical properties but distinct biological functions that are governed by their transcriptional regulation. Moreover, this work reveals a possible connection of immunity-related programmed cell death and senescence through novel mitochondrial tail-anchored proteins.
Title: Triphosphate Tunnel Metalloenzyme Function in Senescence Highlights a Biological Diversification of This Protein Superfamily.

Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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Homology

Orthologs from OrthoDB

NM_001332691.1

Supported by ESTs:

NM_001332692.1

Supported by ESTs:

NM_001332693.1

Supported by ESTs:

NM_001332694.1

Supported by ESTs:

NM_001332695.1

Supported by ESTs:

NM_102384.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables inorganic diphosphate phosphatase activity	IEA Inferred from Electronic Annotation more info
enables kinase activity	IEA Inferred from Electronic Annotation more info
enables pyrophosphatase activity	IDA Inferred from Direct Assay more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within defense response to other organism	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in negative regulation of defense response to bacterium	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in negative regulation of defense response to oomycetes	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in negative regulation of systemic acquired resistance	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in regulation of salicylic acid mediated signaling pathway	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in response to molecule of bacterial origin	IEP Inferred from Expression Pattern more info	PubMed
involved_in response to oomycetes	IEP Inferred from Expression Pattern more info	PubMed
involved_in response to salicylic acid	IEP Inferred from Expression Pattern more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	ISM Inferred from Sequence Model more info
located_in mitochondrial outer membrane	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: Phosphoribulokinase / Uridine kinase family

NP_173944.1

Phosphoribulokinase / Uridine kinase family; FUNCTIONS IN: adenylate cyclase activity, kinase activity, phosphotransferase activity, alcohol group as acceptor, ATP binding; INVOLVED IN: biosynthetic process, cAMP biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Uridine kinase (InterPro:IPR000764), Adenylate cyclase (InterPro:IPR008172); BEST Arabidopsis thaliana protein match is: Phosphoribulokinase / Uridine kinase family (TAIR:AT1G73980.1); Has 4771 Blast hits to 4715 proteins in 1747 species: Archae - 39; Bacteria - 3460; Metazoa - 396; Fungi - 136; Plants - 334; Viruses - 2; Other Eukaryotes - 404 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

9057095..9061140 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_102384.4 → NP_173944.1 Phosphoribulokinase / Uridine kinase family [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_173944.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9C664

UniProtKB/TrEMBL

A0A178WHL9, A0A5S9VYY8

Conserved Domains (1) summary

PLN02318
Location:1 → 672

PLN02318; phosphoribulokinase/uridine kinase
NM_001332691.1 → NP_001323083.1 Phosphoribulokinase / Uridine kinase family [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8AW02
NM_001332693.1 → NP_001323086.1 Phosphoribulokinase / Uridine kinase family [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8AW03
NM_001332692.1 → NP_001323084.1 Phosphoribulokinase / Uridine kinase family [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8AW50

Conserved Domains (1) summary

PLN02318
Location:1 → 503

PLN02318; phosphoribulokinase/uridine kinase
NM_001332694.1 → NP_001323087.1 Phosphoribulokinase / Uridine kinase family [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8AW21
NM_001332695.1 → NP_001323085.1 Phosphoribulokinase / Uridine kinase family [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8AVZ4