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    CYCB3;1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838202, updated on 22-Aug-2024

    Summary

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    Official Symbol
    CYCB3;1
    Primary source
    Araport:AT1G16330
    Locus tag
    AT1G16330
    See related
    TAIR:AT1G16330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    cyclin b3;1; F3O9.13; F3O9_13
    Summary
    core cell cycle genes
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    Genomic context

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    See CYCB3;1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    23
    Sequence:
    Chromosome: 1; NC_003070.9 (5582387..5587461, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Cation efflux family protein Neighboring gene plant/protein (DUF2358) Neighboring gene Aldolase superfamily protein Neighboring gene Aldolase-type TIM barrel family protein Neighboring gene LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of Arabidopsis meiotic cyclins reveals functional diversification among plant cyclin genes. Bulankova P, et al. PLoS Genet, 2013 May. PMID 23671425, Free PMC Article
    2. Functional modules in the Arabidopsis core cell cycle binary protein-protein interaction network. Boruc J, et al. Plant Cell, 2010 Apr. PMID 20407024, Free PMC Article
    3. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cyclin b3;1
    NP_173083.3
    • cyclin b3;1 (CYCB3;1); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin B2;3 (TAIR:AT1G20610.1); Has 4427 Blast hits to 4424 proteins in 376 species: Archae - 0; Bacteria - 0; Metazoa - 2128; Fungi - 557; Plants - 1053; Viruses - 34; Other Eukaryotes - 655 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5582387..5587461 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101499.4 → NP_173083.3  cyclin b3;1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173083.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W969, A0A5S9UR21, A0A7G2DX80
      Conserved Domains (2) summary
      cd20507
      Location:392 → 521
      CYCLIN_CCNB1-like_rpt1; first cyclin box found in cyclin-B1 (CCNB1)-like family
      cd20511
      Location:526 → 642
      CYCLIN_AtCycB-like_rpt2; second cyclin box found in Arabidopsis thaliana B-type cyclins (CycBs) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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