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    2-oxoglutarate-dependent dioxygenase-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838124, updated on 18-Sep-2024

    Summary

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    Official Full Name
    2-oxoglutarate-dependent dioxygenase-like protein
    Primary source
    TAIR:AT1G15540
    Locus tag
    AT1G15540
    See related
    Araport:AT1G15540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T16N11.5; T16N11_5
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (5342090..5343876)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene Concanavalin A-like lectin protein kinase family protein Neighboring gene gibberellin 3-oxidase 1 Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in extracellular region HDA PubMed 

    General protein information

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    Preferred Names
    2-oxoglutarate-dependent dioxygenase-like protein
    NP_001319011.1
    • 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: N-terminal protein myristoylation; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G80320.1); Has 4520 Blast hits to 4453 proteins in 605 species: Archae - 0; Bacteria - 428; Metazoa - 27; Fungi - 309; Plants - 3395; Viruses - 0; Other Eukaryotes - 361 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5342090..5343876
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332174.1 → NP_001319011.1  2-oxoglutarate-dependent dioxygenase-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W5H3, A0A384KUB8, A0A7G2DT27, Q9M9D9
      Conserved Domains (1) summary
      PLN02254
      Location:9 → 289
      PLN02254; gibberellin 3-beta-dioxygenase

    2. NM_001332175.1 → NP_001322930.1  2-oxoglutarate-dependent dioxygenase-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AVH5, A0A7G2DT27

    3. NM_001332176.1 → NP_001322929.1  2-oxoglutarate-dependent dioxygenase-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AVH8, A0A7G2DT27
      Conserved Domains (1) summary
      PLN02254
      Location:16 → 296
      PLN02254; gibberellin 3-beta-dioxygenase

    4. NM_101423.1 → NP_173007.1  2-oxoglutarate-dependent dioxygenase-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173007.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W5H3, A0A384KUB8, A0A7G2DT27, Q9M9D9
      Conserved Domains (1) summary
      PLN02254
      Location:9 → 289
      PLN02254; gibberellin 3-beta-dioxygenase
    Nucleotide Protein
    Heading Accession and Version

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