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    GPI transamidase subunit PIG-U [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837829, updated on 18-Sep-2024

    Summary

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    Official Full Name
    GPI transamidase subunit PIG-U
    Primary source
    TAIR:AT1G12730
    Locus tag
    AT1G12730
    See related
    Araport:AT1G12730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T12C24.26; T12C24_26
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    14
    Sequence:
    Chromosome: 1; NC_003070.9 (4334499..4337957)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene cytochrome P450, family 87, subfamily A, polypeptide 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_101143.4
    NM_202084.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in attachment of GPI anchor to protein IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of GPI-anchor transamidase complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    GPI transamidase subunit PIG-U
    NP_563912.1
    • GPI transamidase subunit PIG-U; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GPI transamidase subunit PIG-U (InterPro:IPR009600); BEST Arabidopsis thaliana protein match is: GPI transamidase subunit PIG-U (TAIR:AT1G63110.1); Has 339 Blast hits to 333 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 121; Plants - 55; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
    NP_973813.1
    • GPI transamidase subunit PIG-U; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GPI transamidase subunit PIG-U (InterPro:IPR009600); BEST Arabidopsis thaliana protein match is: GPI transamidase subunit PIG-U (TAIR:AT1G63110.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4334499..4337957
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101143.4 → NP_563912.1  GPI transamidase subunit PIG-U [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563912.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654E959, Q94K70
      Conserved Domains (1) summary
      pfam06728
      Location:24 → 442
      PIG-U; GPI transamidase subunit PIG-U

    2. NM_202084.2 → NP_973813.1  GPI transamidase subunit PIG-U [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973813.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9U254, F4IDV8
      Conserved Domains (1) summary
      pfam06728
      Location:23 → 358
      PIG-U; GPI transamidase subunit PIG-U
    Nucleotide Protein
    Heading Accession and Version

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