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    NF-YC4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836466, updated on 22-Aug-2024

    Summary

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    Official Symbol
    NF-YC4
    Primary source
    Araport:AT5G63470
    Locus tag
    AT5G63470
    See related
    TAIR:AT5G63470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ''nuclear factor Y; MLE2.10; MLE2_10; nuclear factor Y; subunit C4; subunit C4''
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (25415600..25417199, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 94, subfamily B, polypeptide 1 Neighboring gene SAP domain-containing protein Neighboring gene mediator of RNA polymerase II transcription subunit Neighboring gene CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. NF-YC3, NF-YC4 and NF-YC9 are required for CONSTANS-mediated, photoperiod-dependent flowering in Arabidopsis thaliana. Kumimoto RW, et al. Plant J, 2010 Aug. PMID 20487380
    2. QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests. Qi M, et al. Plant Biotechnol J, 2019 Jan. PMID 29878511, Free PMC Article
    3. QQS orphan gene regulates carbon and nitrogen partitioning across species via NF-YC interactions. Li L, et al. Proc Natl Acad Sci U S A, 2015 Nov 24. PMID 26554020, Free PMC Article
    4. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Tang Y, et al. Mol Plant, 2017 Feb 13. PMID 27876642
    5. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Liu X, et al. Nat Commun, 2016 Sep 14. PMID 27624486, Free PMC Article

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. expression with QQS reduces susceptibility to pathogens and pests
      Title: QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests.
    2. QQS protein binds to the transcriptional regulator AtNF-YC4 (Arabidopsis nuclear factor Y, subunit C4).
      Title: QQS orphan gene regulates carbon and nitrogen partitioning across species via NF-YC interactions.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001037053.2
    NM_125742.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within abscisic acid-activated signaling pathway IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in abscisic acid-activated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within gibberellic acid mediated signaling pathway IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within negative regulation of starch metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of photomorphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of protein metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of gene expression IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of long-day photoperiodism, flowering IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of seed germination IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    located_in nucleus IC
    Inferred by Curator
    more info
    		 PubMed 
    located_in nucleus IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    nuclear factor Y, subunit C4
    NP_001032130.1
    • ''nuclear factor Y, subunit C4'' (NF-YC4); CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C1 (TAIR:AT3G48590.1); Has 1376 Blast hits to 1376 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 467; Fungi - 353; Plants - 441; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).
    NP_201152.1
    • ''nuclear factor Y, subunit C4'' (NF-YC4); CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C1 (TAIR:AT3G48590.1); Has 1376 Blast hits to 1376 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 467; Fungi - 353; Plants - 441; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25415600..25417199 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125742.6 → NP_201152.1  nuclear factor Y, subunit C4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201152.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FMV5
      UniProtKB/TrEMBL
      A0A178UJL4, A0A384KX14, B9DG64
      Conserved Domains (1) summary
      COG5208
      Location:60 → 217
      HAP5; CCAAT-binding factor, subunit C [Transcription]

    2. NM_001037053.2 → NP_001032130.1  nuclear factor Y, subunit C4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001032130.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FMV5
      UniProtKB/TrEMBL
      A0A178UJL4, A0A384KX14, B9DG64
      Conserved Domains (1) summary
      COG5208
      Location:60 → 217
      HAP5; CCAAT-binding factor, subunit C [Transcription]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FMV5.1

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