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    RNI-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835324, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNI-like superfamily protein
    Primary source
    TAIR:AT5G52480
    Locus tag
    AT5G52480
    See related
    Araport:AT5G52480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K24M7.23; K24M7_23
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (21296833..21297858, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene FBD, F-box and Leucine Rich Repeat domains containing protein Neighboring gene fibrillarin 1 Neighboring gene ncRNA Neighboring gene Fibrillarin family protein Neighboring gene tRNA-Leu

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNI-like superfamily protein
    NP_001190522.1
    • RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G05460.1).
    NP_200061.3
    • RNI-like superfamily protein; BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G05460.1); Has 884 Blast hits to 828 proteins in 103 species: Archae - 0; Bacteria - 19; Metazoa - 234; Fungi - 74; Plants - 507; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21296833..21297858 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124627.3 → NP_200061.3  RNI-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200061.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YDC6, A0A654GAU6, Q9FHB4
      Conserved Domains (2) summary
      cd09293
      Location:40 → 167
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:54 → 78
      LRR_AMN1; leucine-rich repeat [structural motif]

    2. NM_001203593.1 → NP_001190522.1  RNI-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190522.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q6NML4
      Conserved Domains (2) summary
      cd09293
      Location:95 → 155
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:16 → 40
      LRR_AMN1; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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