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    PGLP1 2-phosphoglycolate phosphatase 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833635, updated on 5-Nov-2024

    Summary

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    Official Symbol
    PGLP1
    Official Full Name
    2-phosphoglycolate phosphatase 1
    Primary source
    TAIR:AT5G36700
    Locus tag
    AT5G36700
    See related
    Araport:AT5G36700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    2-phosphoglycolate phosphatase 1; ATPGLP1
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    Genomic context

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    See PGLP1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (14421182..14424610, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene proton pump-interactor Neighboring gene uncharacterized protein Neighboring gene Plant thionin family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of the photorespiratory 2-phosphoglycolate phosphatase, PGLP1, in Arabidopsis. Schwarte S, et al. Plant Physiol, 2007 Jul. PMID 17478634, Free PMC Article
    2. The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. Peltier JB, et al. Mol Cell Proteomics, 2006 Jan. PMID 16207701
    3. Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. Rutschow H, et al. Plant Physiol, 2008 Sep. PMID 18633119, Free PMC Article
    4. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475
    5. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Hydrogen peroxide sulfenylates and inhibits the photorespiratory enzyme PGLP1 to modulate plant thermotolerance.
      Title: Hydrogen peroxide sulfenylates and inhibits the photorespiratory enzyme PGLP1 to modulate plant thermotolerance.
    2. Combined data establish At5g36700 as the gene encoding the photorespiratory 2-phosphoglycolate phosphatase, PGLP1.
      Title: Identification of the photorespiratory 2-phosphoglycolate phosphatase, PGLP1, in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_001125844.1
    NM_001125845.1
    NM_001203498.2
    NM_123027.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phosphoglycolate phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphoglycolate phosphatase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast stroma HDA PubMed 
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    2-phosphoglycolate phosphatase 1
    NP_001119316.1
    • 2-phosphoglycolate phosphatase 1 (PGLP1); FUNCTIONS IN: phosphoglycolate phosphatase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIA (InterPro:IPR006357), 2-phosphoglycolate phosphatase, eukaryotic (InterPro:IPR006349); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G36790.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001119317.1
    • 2-phosphoglycolate phosphatase 1 (PGLP1); FUNCTIONS IN: phosphoglycolate phosphatase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIA (InterPro:IPR006357), 2-phosphoglycolate phosphatase, eukaryotic (InterPro:IPR006349); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G36790.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001190427.1
    • 2-phosphoglycolate phosphatase 1 (PGLP1); FUNCTIONS IN: phosphoglycolate phosphatase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 7 plant structures; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIA (InterPro:IPR006357), 2-phosphoglycolate phosphatase, eukaryotic (InterPro:IPR006349); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G36790.3).
    NP_198485.2
    • 2-phosphoglycolate phosphatase 1 (PGLP1); FUNCTIONS IN: phosphoglycolate phosphatase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 7 plant structures; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIA (InterPro:IPR006357), 2-phosphoglycolate phosphatase, eukaryotic (InterPro:IPR006349); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G36790.3); Has 4544 Blast hits to 4541 proteins in 1432 species: Archae - 113; Bacteria - 2784; Metazoa - 605; Fungi - 179; Plants - 108; Viruses - 0; Other Eukaryotes - 755 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      14421182..14424610 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203498.2 → NP_001190427.1  2-phosphoglycolate phosphatase 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190427.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K4H2, P0DKC3, P0DKC4, Q8GY27, Q8L3U4, Q9LHT3, Q9LTH1
      UniProtKB/TrEMBL
      A0A178UPN0, A0A5S9Y8H5, A0A654G5Q1
      Conserved Domains (1) summary
      PLN02645
      Location:56 → 362
      PLN02645; phosphoglycolate phosphatase

    2. NM_123027.4 → NP_198485.2  2-phosphoglycolate phosphatase 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198485.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K4H2, P0DKC3, P0DKC4, Q8GY27, Q8L3U4, Q9LHT3, Q9LTH1
      UniProtKB/TrEMBL
      A0A178UPN0, A0A5S9Y8H5, A0A654G5Q1
      Conserved Domains (1) summary
      PLN02645
      Location:56 → 362
      PLN02645; phosphoglycolate phosphatase

    3. NM_001125844.1 → NP_001119316.1  2-phosphoglycolate phosphatase 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119316.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K4H2, P0DKC3, P0DKC4, Q8GY27, Q8L3U4, Q9LHT3, Q9LTH1
      UniProtKB/TrEMBL
      A0A178UPN0, A0A5S9Y8H5, A0A654G5Q1
      Conserved Domains (1) summary
      PLN02645
      Location:56 → 362
      PLN02645; phosphoglycolate phosphatase

    4. NM_001125845.1 → NP_001119317.1  2-phosphoglycolate phosphatase 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119317.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G5Q1
      Conserved Domains (3) summary
      PLN02645
      Location:56 → 332
      PLN02645; phosphoglycolate phosphatase
      pfam13242
      Location:278 → 330
      Hydrolase_like; HAD-hyrolase-like
      pfam13344
      Location:82 → 184
      Hydrolase_6; Haloacid dehalogenase-like hydrolase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0DKC3.1
    P0DKC4.1

    Gene LinkOut

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    Other Literature Sources
    Molecular Biology Databases
    Research Materials