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    Zn-dependent exopeptidases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832189, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Zn-dependent exopeptidases superfamily protein
    Primary source
    TAIR:AT5G20660
    Locus tag
    AT5G20660
    See related
    Araport:AT5G20660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1M15.60; T1M15_60
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    13
    Sequence:
    Chromosome: 5; NC_003076.8 (6986180..6991139)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene LURP-one-like protein (DUF567) Neighboring gene ncRNA Neighboring gene copper transporter 5 Neighboring gene DUF1677 family protein (DUF1677) Neighboring gene TRICHOME BIREFRINGENCE-LIKE 16

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic analysis of acd6-1 reveals complex defense networks and leads to identification of novel defense genes in Arabidopsis. Lu H, et al. Plant J, 2009 May. PMID 19144005, Free PMC Article
    2. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article
    3. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
    5. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. SUP6 encodes an uncharacterized putative metalloprotease that is important for basal disease resistance.
      Title: Genetic analysis of acd6-1 reveals complex defense networks and leads to identification of novel defense genes in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001161255.1
    NM_001343678.1
    NM_001343679.1
    NM_122073.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables metalloexopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum HDA PubMed 

    General protein information

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    Preferred Names
    Zn-dependent exopeptidases superfamily protein
    NP_001154727.1
    • Zn-dependent exopeptidases superfamily protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 36 Blast hits to 36 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_197566.1
    • Zn-dependent exopeptidases superfamily protein; FUNCTIONS IN: peptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M28 (InterPro:IPR007484); BEST Arabidopsis thaliana protein match is: Zn-dependent exopeptidases superfamily protein (TAIR:AT1G67420.2); Has 1349 Blast hits to 1339 proteins in 371 species: Archae - 7; Bacteria - 487; Metazoa - 434; Fungi - 254; Plants - 72; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6986180..6991139
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122073.2 → NP_197566.1  Zn-dependent exopeptidases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U9I1, A0A5S9Y6D1, A0A654G325, Q0WVZ7
      Conserved Domains (2) summary
      cd03875
      Location:78 → 396
      M28_Fxna_like; M28 Zn-peptidase Endoplasmic reticulum metallopeptidase 1
      cl21472
      Location:510 → 594
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...

    2. NM_001343678.1 → NP_001332551.1  Zn-dependent exopeptidases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BHB9

    3. NM_001343679.1 → NP_001332552.1  Zn-dependent exopeptidases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BHD0

    4. NM_001161255.1 → NP_001154727.1  Zn-dependent exopeptidases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8LCY8
    Nucleotide Protein
    Heading Accession and Version

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