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    [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829091, updated on 22-Aug-2024

    Summary

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    Primary source
    Araport:AT4G29700
    Locus tag
    AT4G29700
    See related
    TAIR:AT4G29700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T16L4.210; T16L4_210
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (14543138..14545310, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Alkaline-phosphatase-like family protein Neighboring gene Alkaline-phosphatase-like family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Alkaline-phosphatase-like family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198
    5. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_119115.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nucleoside triphosphate diphosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Alkaline-phosphatase-like family protein
    NP_194699.1
    • Alkaline-phosphatase-like family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process, nucleotide metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Alkaline phosphatase-like, alpha/beta/alpha (InterPro:IPR017849), Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase (InterPro:IPR002591), Alkaline-phosphatase-like, core domain (InterPro:IPR017850); BEST Arabidopsis thaliana protein match is: Alkaline-phosphatase-like family protein (TAIR:AT4G29690.1); Has 2237 Blast hits to 2218 proteins in 571 species: Archae - 24; Bacteria - 916; Metazoa - 704; Fungi - 177; Plants - 108; Viruses - 6; Other Eukaryotes - 302 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14543138..14545310 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119115.3 → NP_194699.1  Alkaline-phosphatase-like family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194699.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UYH6, A0A5S9XXF0, A0A654FU29, Q9SU81
      Conserved Domains (1) summary
      pfam01663
      Location:60 → 394
      Phosphodiest; Type I phosphodiesterase / nucleotide pyrophosphatase
    Nucleotide Protein
    Heading Accession and Version

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