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    RH1 RNA helicase 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827266, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RH1
    Official Full Name
    RNA helicase 1
    Primary source
    TAIR:AT4G15850
    Locus tag
    AT4G15850
    See related
    Araport:AT4G15850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATRH1; DL3965W; FCAALL.401; RNA helicase 1
    Summary
    plant DEAD box-like RNA helicase.
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    Genomic context

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    See RH1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Sequence:
    Chromosome: 4; NC_003075.7 (9001174..9004734)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ABC subfamily C protein Neighboring gene ARM repeat superfamily protein Neighboring gene BTB/POZ domain-containing protein Neighboring gene pseudo Neighboring gene terpene synthase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structure, organization and putative function of the genes identified within a 23.9-kb fragment from Arabidopsis thaliana chromosome IV. Aubourg S, et al. Gene, 1997 Oct 15. PMID 9358062
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_117677.7

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DEAD/H-box RNA helicase binding TAS
    Traceable Author Statement
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA helicase 1
    NP_193320.6
    • RNA helicase 1 (RH1); CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT4G16630.1); Has 38711 Blast hits to 38056 proteins in 2969 species: Archae - 603; Bacteria - 19125; Metazoa - 5736; Fungi - 4393; Plants - 2535; Viruses - 13; Other Eukaryotes - 6306 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9001174..9004734
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117677.7 → NP_193320.6  RNA helicase 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193320.6

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22679, O23251, Q7FGZ2
      UniProtKB/TrEMBL
      A0A178UXT6
      Conserved Domains (3) summary
      smart00487
      Location:46 → 303
      DEXDc; DEAD-like helicases superfamily
      cd00079
      Location:319 → 441
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      cl21455
      Location:37 → 213
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7FGZ2.3

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