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    PapD-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826300, updated on 18-Sep-2024

    Summary

    Official Full Name
    PapD-like superfamily protein
    Primary source
    TAIR:AT4G21450
    Locus tag
    AT4G21450
    See related
    Araport:AT4G21450
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F18E5.70; F18E5_70
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    Genomic context

    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (11425933..11428435)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene MYB-like 102 Neighboring gene receptor-interacting protein Neighboring gene Ribosomal protein S24/S35 Neighboring gene riboflavin kinase/FMN hydrolase Neighboring gene sugar transporter protein 12

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001203857.1
    NM_118265.5
    NM_202855.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     
    located_in plasma membrane HDA PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    PapD-like superfamily protein
    NP_001190786.1
    • PapD-like superfamily protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535); BEST Arabidopsis thaliana protein match is: PapD-like superfamily protein (TAIR:AT4G05060.1).
    NP_567627.1
    • PapD-like superfamily protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535); BEST Arabidopsis thaliana protein match is: PapD-like superfamily protein (TAIR:AT4G05060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974584.1
    • PapD-like superfamily protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535); BEST Arabidopsis thaliana protein match is: PapD-like superfamily protein (TAIR:AT4G05060.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      11425933..11428435
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118265.5NP_567627.1  PapD-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567627.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65410, Q3E7Q2, Q8VYN2
      UniProtKB/TrEMBL
      A0A178UUW2, A0A5S9XUF6
      Conserved Domains (1) summary
      pfam00635
      Location:108220
      Motile_Sperm; MSP (Major sperm protein) domain
    2. NM_001203857.1NP_001190786.1  PapD-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190786.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JJI7
      Conserved Domains (1) summary
      pfam00635
      Location:108239
      Motile_Sperm; MSP (Major sperm protein) domain
    3. NM_202855.1NP_974584.1  PapD-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974584.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UW83
      Conserved Domains (1) summary
      pfam00635
      Location:108211
      Motile_Sperm; MSP (Major sperm protein) domain