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    PHIP1 phragmoplastin interacting protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824700, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PHIP1
    Official Full Name
    phragmoplastin interacting protein 1
    Primary source
    TAIR:AT3G55340
    Locus tag
    AT3G55340
    See related
    Araport:AT3G55340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    phragmoplastin interacting protein 1
    Summary
    Plant-specific protein. Interacts with phragmoplastin, Rop1 and Rop2. Involved in cell plate formation.
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    Genomic context

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    See PHIP1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (20515630..20518059)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene P-glycoprotein 20 Neighboring gene ncRNA Neighboring gene PsbP-like protein 1 Neighboring gene PIF / Ping-Pong family of plant transposase Neighboring gene 3-oxo-5-alpha-steroid 4-dehydrogenase family protein Neighboring gene OBF-binding protein 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Perinuclear and nuclear envelope localizations of Arabidopsis Ran proteins. Ma L, et al. Plant Cell Rep, 2007 Aug. PMID 17530257
    2. A novel RNA-binding protein associated with cell plate formation. Ma L, et al. Plant Physiol, 2008 Sep. PMID 18621982, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_115392.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell plate formation involved in plant-type cell wall biogenesis IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in phragmoplast assembly IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in phragmoplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phragmoplastin interacting protein 1
    NP_191094.1
    • phragmoplastin interacting protein 1 (PHIP1); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G35410.1); Has 17490 Blast hits to 13137 proteins in 598 species: Archae - 10; Bacteria - 621; Metazoa - 8175; Fungi - 2466; Plants - 2451; Viruses - 16; Other Eukaryotes - 3751 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20515630..20518059
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115392.4 → NP_191094.1  phragmoplastin interacting protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191094.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VII4, Q681R8, Q8W2K5, Q9M3B8
      UniProtKB/TrEMBL
      A0A384KSV0, A0A5S9XL10
      Conserved Domains (3) summary
      PTZ00368
      Location:393 → 592
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
      cd12271
      Location:163 → 234
      RRM1_PHIP1; RNA recognition motif 1 (RRM1) found in Arabidopsis thaliana phragmoplastin interacting protein 1 (PHIP1) and similar proteins
      cd12272
      Location:263 → 334
      RRM2_PHIP1; RNA recognition motif 2 (RRM2) found in Arabidopsis thaliana phragmoplastin interacting protein 1 (PHIP1) and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M3B8.1

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