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    RHD4 Phosphoinositide phosphatase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824309, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RHD4
    Official Full Name
    Phosphoinositide phosphatase family protein
    Primary source
    TAIR:AT3G51460
    Locus tag
    AT3G51460
    See related
    Araport:AT3G51460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ROOT HAIR DEFECTIVE 4; ROOT HAIR DEFECTIVE4
    Summary
    Encodes RHD4 (ROOT HAIR DEFECTIVE4), a phosphatidylinositol-4-phosphate phosphatase required for root hair development.
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    Genomic context

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    See RHD4 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    21
    Sequence:
    Chromosome: 3; NC_003074.8 (19092518..19097437)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Calcium-dependent phosphotriesterase superfamily protein Neighboring gene Calcium-dependent phosphotriesterase superfamily protein Neighboring gene Protein phosphatase 2C family protein Neighboring gene miscRNA Neighboring gene glutamate receptor 3.6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. GLABROUS INFLORESCENCE STEMS3 binds to and activates RHD2 and RHD4 genes to promote root hair elongation in Arabidopsis. Huang L, et al. Plant J, 2024 Jan. PMID 37738394
    2. Myosin XIK of Arabidopsis thaliana accumulates at the root hair tip and is required for fast root hair growth. Park E, et al. PLoS One, 2013. PMID 24116145, Free PMC Article
    3. Root hair defective4 encodes a phosphatidylinositol-4-phosphate phosphatase required for proper root hair development in Arabidopsis thaliana. Thole JM, et al. Plant Cell, 2008 Feb. PMID 18281508, Free PMC Article
    4. The Rab GTPase RabA4d regulates pollen tube tip growth in Arabidopsis thaliana. Szumlanski AL, et al. Plant Cell, 2009 Feb. PMID 19208902, Free PMC Article
    5. Three SAC1-like genes show overlapping patterns of expression in Arabidopsis but are remarkably silent during embryo development. Despres B, et al. Plant J, 2003 May. PMID 12713536

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. GLABROUS INFLORESCENCE STEMS3 binds to and activates RHD2 and RHD4 genes to promote root hair elongation in Arabidopsis.
      Title: GLABROUS INFLORESCENCE STEMS3 binds to and activates RHD2 and RHD4 genes to promote root hair elongation in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_115005.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phosphatidylinositol-4-phosphate phosphatase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell tip growth IMP
    Inferred from Mutant Phenotype
    more info
    		  
    involved_in response to wounding NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within root hair cell tip growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in endoplasmic reticulum HDA PubMed 
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 
    located_in plasma membrane of cell tip IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasmodesma HDA PubMed 
    located_in pollen tube tip IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in root hair tip IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Phosphoinositide phosphatase family protein
    NP_190714.2
    • ROOT HAIR DEFECTIVE4 (RHD4); FUNCTIONS IN: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity, phosphatidylinositol-4-phosphate phosphatase activity; INVOLVED IN: root hair cell tip growth; LOCATED IN: plasma membrane of cell tip, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Synaptojanin, N-terminal (InterPro:IPR002013); BEST Arabidopsis thaliana protein match is: Phosphoinositide phosphatase family protein (TAIR:AT5G66020.1); Has 1757 Blast hits to 1639 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 573; Fungi - 593; Plants - 286; Viruses - 0; Other Eukaryotes - 305 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19092518..19097437
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115005.5 → NP_190714.2  Phosphoinositide phosphatase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190714.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WM67, Q9C5G5, Q9SD03
      UniProtKB/TrEMBL
      A0A178VA55, A0A5S9XKM9, A0A654FFR9
      Conserved Domains (1) summary
      COG5329
      Location:65 → 551
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C5G5.1

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