U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Outer membrane OMP85 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823537, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Outer membrane OMP85 family protein
    Primary source
    TAIR:AT3G44160
    Locus tag
    AT3G44160
    See related
    Araport:AT3G44160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    11
    Sequence:
    Chromosome: 3; NC_003074.8 (15888840..15891988, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene uncharacterized protein Neighboring gene Expp1 protein Neighboring gene plant self-incompatibility protein S1 family protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The outer membrane Omp85-like protein P39 influences metabolic homeostasis in mature Arabidopsis thaliana. Hsueh YC, et al. Plant Biol (Stuttg), 2018 Sep. PMID 29758131
    2. The Omp85-type outer membrane protein p36 of Arabidopsis thaliana evolved by recent gene duplication. Nicolaisen K, et al. J Plant Res, 2015 Mar. PMID 25608613
    3. Chloroplast outer envelope protein P39 in Arabidopsis thaliana belongs to the Omp85 protein family. Hsueh YC, et al. Proteins, 2017 Aug. PMID 25401771
    4. Ubiquitin-dependent chloroplast-associated protein degradation in plants. Ling Q, et al. Science, 2019 Feb 22. PMID 30792274
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. This work identified SP2 (AT3G44160) and CDC48 as functional partners of the SP1 E3 ligase and, in so doing, defined a multicomponent system for chloroplast protein degradation involving integral outer envelope membrane and cytosolic factors.
      Title: Ubiquitin-dependent chloroplast-associated protein degradation in plants.
    2. important, but not essential, for maintenance of metabolic homeostasis
      Title: The outer membrane Omp85-like protein P39 influences metabolic homeostasis in mature Arabidopsis thaliana.
    3. Chloroplast outer envelope protein P39 in Arabidopsis thaliana belongs to the Omp85 protein family.
      Title: Chloroplast outer envelope protein P39 in Arabidopsis thaliana belongs to the Omp85 protein family.
    4. In the Arabidopsis thaliana Toc75-V/Oep80 gene subfamily, two genes don't contain polypeptide transport associated domains, and are annotated as P39 and P36. P36 derives from a very recent gene duplication of P39; it appears to be specific to A. thaliana.
      Title: The Omp85-type outer membrane protein p36 of Arabidopsis thaliana evolved by recent gene duplication.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    NM_114284.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables channel activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast outer membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Outer membrane OMP85 family protein
    NP_190002.2
    • Outer membrane OMP85 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: outer membrane; CONTAINS InterPro DOMAIN/s: Bacterial surface antigen (D15) (InterPro:IPR000184); BEST Arabidopsis thaliana protein match is: Outer membrane OMP85 family protein (TAIR:AT3G48620.1); Has 794 Blast hits to 794 proteins in 257 species: Archae - 0; Bacteria - 513; Metazoa - 2; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      15888840..15891988 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114284.4 → NP_190002.2  Outer membrane OMP85 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190002.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5PP51, Q9LXP7
      UniProtKB/TrEMBL
      A0A178VGH2, A0A5S9XHN0, A0A654FCL2
      Conserved Domains (1) summary
      TIGR00992
      Location:92 → 341
      3a0901s03IAP75; chloroplast envelope protein translocase, IAP75 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5PP51.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools