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    [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822534, updated on 22-Aug-2024

    Summary

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    Primary source
    Araport:AT3G28956
    Locus tag
    AT3G28956
    See related
    TAIR:AT3G28956
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (10980401..10982757, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene AIG2-like (avirulence induced gene) family protein Neighboring gene pseudo Neighboring gene Cupredoxin superfamily protein Neighboring gene Transmembrane amino acid transporter family protein Neighboring gene defective in cullin neddylation protein (DUF298)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_148760.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in transcription initiation at RNA polymerase III promoter IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of RNA polymerase III complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA polymerase II, Rpb4, core protein
    NP_683602.1
    • RNA polymerase II, Rpb4, core protein; FUNCTIONS IN: DNA-directed RNA polymerase activity, nucleotide binding, catalytic activity; INVOLVED IN: cellular metabolic process, transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HRDC-like (InterPro:IPR010997), RNA polymerase II, Rpb4 (InterPro:IPR005574), RNA polymerase II, Rpb4, core (InterPro:IPR006590); BEST Arabidopsis thaliana protein match is: RNA polymerase II, Rpb4, core protein (TAIR:AT5G62950.3); Has 159 Blast hits to 159 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 17; Plants - 37; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      10980401..10982757 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338984.1 → NP_001325906.1  RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V818, F4J1Q7

    2. NM_001338983.1 → NP_001325905.1  RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LMM8

    3. NM_001338982.1 → NP_001325904.1  RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V818, A0A1I9LMM7

    4. NM_001338981.1 → NP_001325903.1  RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V6I2, A0A1I9LMM6

    5. NM_001338985.1 → NP_001325907.1  RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V818, F4J1Q7

    6. NM_001338987.1 → NP_001325909.1  RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V818, A0A1I9LMM7

    7. NM_001338986.1 → NP_001325908.1  RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V6I2, A0A1I9LMM6

    8. NM_001338988.1 → NP_001325910.1  RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V818, F4J1Q7

    9. NM_001338978.1 → NP_001325912.1  RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V818, A0A1I9LMM7

    10. NM_001338980.1 → NP_001325911.1  RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V818, F4J1Q7

    11. NM_001338979.1 → NP_001325913.1  RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V818, F4J1Q7

    12. NM_148760.3 → NP_683602.1  RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_683602.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V818, F4J1Q7
      Conserved Domains (1) summary
      smart00657
      Location:2 → 118
      RPOL4c; DNA-directed RNA-polymerase II subunit
    Nucleotide Protein
    Heading Accession and Version

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