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    ARI3 RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822393, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ARI3
    Official Full Name
    RING/U-box superfamily protein
    Primary source
    TAIR:AT3G27710
    Locus tag
    AT3G27710
    See related
    Araport:AT3G27710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS ARIADNE 13; ARABIDOPSIS ARIADNE 3; ARARI3; ARI13; ARIADNE 13; ARIADNE 3; ATARI13
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    Genomic context

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    See ARI3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (10269206..10271065)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene photosystem II light harvesting complex protein 2.3 Neighboring gene zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein Neighboring gene IBR domain containing protein Neighboring gene DNA helicase ROCK-N-ROLLERS Neighboring gene carbamoyl phosphate synthetase A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_113687.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RING/U-box superfamily protein
    NP_189408.1
    • ARIADNE 3 (ARI3); FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G34370.1); Has 3131 Blast hits to 3105 proteins in 234 species: Archae - 0; Bacteria - 4; Metazoa - 1303; Fungi - 627; Plants - 676; Viruses - 17; Other Eukaryotes - 504 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      10269206..10271065
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113687.3 → NP_189408.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189408.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LVX0
      UniProtKB/TrEMBL
      A0A178VDF7, A0A5S9XH09
      Conserved Domains (4) summary
      smart00647
      Location:190 → 254
      IBR; In Between Ring fingers
      COG4026
      Location:431 → 519
      COG4026; Uncharacterized protein, contains TOPRIM domain, potential nuclease [General function prediction only]
      cd16623
      Location:121 → 171
      RING-HC_RBR_TRIAD1_like; RING finger, HC subclass, found in two RING fingers and DRIL [double RING finger linked] 1 (TRIAD1), ankyrin repeat and IBR domain-containing protein 1 (ANKIB1) and similar proteins
      pfam01485
      Location:277 → 311
      IBR; IBR domain, a half RING-finger domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LVX0.1

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