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    Ypt/Rab-GAP domain of gyp1p superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817622, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ypt/Rab-GAP domain of gyp1p superfamily protein
    Primary source
    TAIR:AT2G30710
    Locus tag
    AT2G30710
    See related
    Araport:AT2G30710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T11J7.10; T11J7_10
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    10
    Sequence:
    Chromosome: 2; NC_003071.7 (13085886..13089287, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene lateral signaling target-like protein (Protein of unknown function, DUF593) Neighboring gene bacterial trigger factor Neighboring gene GPI-anchored protein Neighboring gene Thioesterase/thiol ester dehydrase-isomerase superfamily protein Neighboring gene Protein kinase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_128624.2

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ypt/Rab-GAP domain of gyp1p superfamily protein
    NP_565706.1
    • Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT1G04830.2); Has 4509 Blast hits to 4436 proteins in 233 species: Archae - 0; Bacteria - 0; Metazoa - 2389; Fungi - 783; Plants - 598; Viruses - 0; Other Eukaryotes - 739 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      13085886..13089287 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128624.2 → NP_565706.1  Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565706.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VNP5, O49336, Q94JZ5
      Conserved Domains (2) summary
      COG5210
      Location:14 → 439
      COG5210; GTPase-activating protein [General function prediction only]
      pfam00566
      Location:200 → 392
      RabGAP-TBC; Rab-GTPase-TBC domain
    Nucleotide Protein
    Heading Accession and Version

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