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    SNARE associated Golgi protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814768, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SNARE associated Golgi protein family
    Primary source
    TAIR:AT2G02370
    Locus tag
    AT2G02370
    See related
    Araport:AT2G02370
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T16F16.16; T16F16_16
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (621058..623526)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene SKP1 interacting partner 3 Neighboring gene phloem protein 2-B10 Neighboring gene glutathione S-transferase (class zeta) 2 Neighboring gene glutathione S-transferase zeta 1 Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084401.1
    NM_001335106.1
    NM_126294.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SNARE associated Golgi protein family
    NP_001077870.1
    • SNARE associated Golgi protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT1G12450.1); Has 2420 Blast hits to 2420 proteins in 703 species: Archae - 6; Bacteria - 1288; Metazoa - 120; Fungi - 130; Plants - 226; Viruses - 0; Other Eukaryotes - 650 (source: NCBI BLink).
    NP_565283.1
    • SNARE associated Golgi protein family; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT1G12450.1); Has 2420 Blast hits to 2420 proteins in 703 species: Archae - 6; Bacteria - 1288; Metazoa - 120; Fungi - 130; Plants - 226; Viruses - 0; Other Eukaryotes - 650 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      621058..623526
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126294.4 → NP_565283.1  SNARE associated Golgi protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565283.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W0A6, A0A5S9WWW3, Q9ASX7, Q9ZVQ5
      Conserved Domains (2) summary
      COG0398
      Location:63 → 286
      TVP38; Uncharacterized membrane protein YdjX, TVP38/TMEM64 family, SNARE-associated domain [Function unknown]
      COG0586
      Location:88 → 283
      DedA; Uncharacterized membrane protein DedA, SNARE-associated domain [Function unknown]

    2. NM_001335106.1 → NP_001324972.1  SNARE associated Golgi protein family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W0A6, A0A5S9WWW3, Q9ASX7, Q9ZVQ5

    3. NM_001084401.1 → NP_001077870.1  SNARE associated Golgi protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077870.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W0A6, A0A5S9WWW3, Q9ASX7, Q9ZVQ5
      Conserved Domains (2) summary
      COG0398
      Location:63 → 286
      TVP38; Uncharacterized membrane protein YdjX, TVP38/TMEM64 family, SNARE-associated domain [Function unknown]
      COG0586
      Location:88 → 283
      DedA; Uncharacterized membrane protein DedA, SNARE-associated domain [Function unknown]
    Nucleotide Protein
    Heading Accession and Version

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