fbxl16 F-box and leucine-rich repeat protein 16 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: fbxl16provided by ZNC
Official Full Name: F-box and leucine-rich repeat protein 16provided by ZNC
Primary source: ZFIN:ZDB-GENE-120215-180
See related: Ensembl:ENSDARG00000060915 AllianceGenome:ZFIN:ZDB-GENE-120215-180
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:dkey-20j1.3
Summary: Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human FBXL16 (F-box and leucine rich repeat protein 16). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 3

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	3	NC_007114.7 (28634481..28665291, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	3	NC_007114.6 (28503639..28534449, complement)

Chromosome 3 - NC_007114.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of SCF ubiquitin ligase complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: F-box/LRR-repeat protein 16

Names: Fbxl16 protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001201336.1 → NP_001188265.1 F-box/LRR-repeat protein 16

Status: VALIDATED

Source sequence(s)

CR792426, CR792438, CT573425

UniProtKB/TrEMBL

A0A8M1P1L4, I3ITN3

Related

ENSDARP00000126304.1, ENSDART00000151670.2

Conserved Domains (2) summary

cd09293
Location:215 → 446

AMN1; Antagonist of mitotic exit network protein 1

sd00034
Location:258 → 283

LRR_AMN1; leucine-rich repeat [structural motif]