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    zgc:171482 zgc:171482 [ Danio rerio (zebrafish) ]

    Gene ID: 796610, updated on 25-Apr-2024

    Summary

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    Official Symbol
    zgc:171482provided by ZNC
    Official Full Name
    zgc:171482provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-080204-84
    See related
    Ensembl:ENSDARG00000074415 AllianceGenome:ZFIN:ZDB-GENE-080204-84
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZMAT4 (zinc finger matrin-type 4). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See zgc:171482 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (39656845..39831086, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (39530895..39704982, complement)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 35 member F3b Neighboring gene uncharacterized LOC101886518 Neighboring gene MARVEL domain containing 1 Neighboring gene secreted frizzled-related protein 5 Neighboring gene golgin A7 family, member Bb

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC796610; zinc finger protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001128272.1 → NP_001121744.1  zinc finger protein

      See identical proteins and their annotated locations for NP_001121744.1

      Status: PROVISIONAL

      Source sequence(s)
      BC155068
      UniProtKB/TrEMBL
      A0A8M1NH61, A9JST7
      Related
      ENSDARP00000117708.1, ENSDART00000138981.3
      Conserved Domains (3) summary
      smart00451
      Location:74 → 108
      ZnF_U1; U1-like zinc finger
      sd00020
      Location:17 → 39
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12874
      Location:16 → 39
      zf-met; Zinc-finger of C2H2 type

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      39656845..39831086 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005157052.4 → XP_005157109.2  uncharacterized protein LOC796610 isoform X1

      UniProtKB/TrEMBL
      A0A8M2B389
      Related
      ENSDARP00000098098.3, ENSDART00000115089.4
      Conserved Domains (3) summary
      smart00451
      Location:167 → 198
      ZnF_U1; U1-like zinc finger
      sd00020
      Location:170 → 192
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12874
      Location:37 → 60
      zf-met; Zinc-finger of C2H2 type

    2. XM_017358808.2 → XP_017214297.1  uncharacterized protein LOC796610 isoform X2

      UniProtKB/TrEMBL
      A0A8M6Z3V8
      Conserved Domains (3) summary
      smart00451
      Location:95 → 129
      ZnF_U1; U1-like zinc finger
      sd00020
      Location:38 → 60
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12874
      Location:37 → 60
      zf-met; Zinc-finger of C2H2 type
    Nucleotide Protein
    Heading Accession and Version

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