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    tbc1d12 TBC1 domain family member 12 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 780023, updated on 4-Nov-2024

    Summary

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    Official Symbol
    tbc1d12provided by Xenbase
    Official Full Name
    TBC1 domain family member 12provided by Xenbase
    Primary source
    Xenbase:XB-GENE-989549
    See related
    Ensembl:ENSXETG00000030404 AllianceGenome:Xenbase:XB-GENE-989549
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Summary
    Orthologous to human TBC1D12 (TBC1 domain family member 12). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See tbc1d12 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (37391769..37437508)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (29232988..29277496)

    Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene fibroblast growth factor binding protein 3 Neighboring gene D(1C) dopamine receptor Neighboring gene fibrous sheath CABYR-binding protein Neighboring gene uncharacterized LOC101735151 Neighboring gene uncharacterized LOC105947745

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC145264

    General protein information

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    Preferred Names
    TBC1 domain family member 12
    Names
    RabGAP/TBC domain containing protein (XD144)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001079100.1 → NP_001072568.1  TBC1 domain family member 12

      See identical proteins and their annotated locations for NP_001072568.1

      Status: PROVISIONAL

      Source sequence(s)
      BC122911
      UniProtKB/Swiss-Prot
      Q0IHY4
      Related
      ENSXETP00000084388.1, ENSXETT00000073144.2
      Conserved Domains (1) summary
      smart00164
      Location:389 → 622
      TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      37391769..37437508
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031905193.1 → XP_031761053.1  TBC1 domain family member 12 isoform X1

      UniProtKB/TrEMBL
      A0A6I8RJN4
      Related
      ENSXETP00000082083.1, ENSXETT00000073687.2
      Conserved Domains (1) summary
      smart00164
      Location:370 → 603
      TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0IHY4.1 GenPept UniProtKB/Swiss-Prot:Q0IHY4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.