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    rbm12b RNA binding motif protein 12B gene 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 733876, updated on 4-Nov-2024

    Summary

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    Official Symbol
    rbm12bprovided by Xenbase
    Official Full Name
    RNA binding motif protein 12B gene 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-22063327
    See related
    Ensembl:ENSXETG00000025920 AllianceGenome:Xenbase:XB-GENE-22063327
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    rbm12b.1
    Summary
    Predicted to enable RNA binding activity. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See rbm12b in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (127732986..127743963, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (112725368..112730973, complement)

    Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein 12B gene 3 Neighboring gene RNA binding motif protein 12B gene 2 Neighboring gene transmembrane protein 67 Neighboring gene pyruvate dehydrogenase phosphatase catalytic subunit 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RNA binding motif protein 12B gene 1
    Names
    RNA binding motif protein 12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001045614.1 → NP_001039079.1  RNA binding motif protein 12B gene 1

      See identical proteins and their annotated locations for NP_001039079.1

      Status: PROVISIONAL

      Source sequence(s)
      CR855734
      UniProtKB/TrEMBL
      F7DVD2, Q28D32
      Related
      ENSXETP00000032202.4, ENSXETT00000032202.5
      Conserved Domains (1) summary
      cl17169
      Location:322 → 397
      RRM_SF; RNA recognition motif (RRM) superfamily

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      127732986..127743963 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031903418.1 → XP_031759278.1  RNA binding motif protein 12B gene 1 isoform X1

      UniProtKB/TrEMBL
      A0A803KJL8
      Conserved Domains (1) summary
      cl17169
      Location:322 → 397
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. XM_031903419.1 → XP_031759279.1  RNA binding motif protein 12B gene 1 isoform X1

      UniProtKB/TrEMBL
      A0A803KJL8
      Related
      ENSXETP00000112094.1, ENSXETT00000109832.1
      Conserved Domains (1) summary
      cl17169
      Location:322 → 397
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. XM_012964841.3 → XP_012820295.2  RNA binding motif protein 12B gene 1 isoform X1

      UniProtKB/TrEMBL
      A0A803KJL8
      Conserved Domains (1) summary
      cl17169
      Location:322 → 397
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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