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    sult1e1 sulfotransferase family 1E member 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 733517, updated on 4-Nov-2024

    Summary

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    Official Symbol
    sult1e1provided by Xenbase
    Official Full Name
    sulfotransferase family 1E member 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-5756033
    See related
    Ensembl:ENSXETG00000006064 AllianceGenome:Xenbase:XB-GENE-5756033
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    ste; est-1
    Summary
    Predicted to enable sulfotransferase activity. Predicted to act upstream of or within catecholamine metabolic process. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in breast cancer and endometrial cancer. Orthologous to human SULT1E1 (sulfotransferase family 1E member 1). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See sult1e1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (33887344..33906000, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (38982214..38998925, complement)

    Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene transfer RNA valine (anticodon UAC) Neighboring gene transfer RNA valine (anticodon UAC) Neighboring gene transfer RNA isoleucine (anticodon UAU) Neighboring gene transfer RNA valine (anticodon UAC) Neighboring gene solute carrier family 25 member 45 Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene transfer RNA valine (anticodon CAC)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables sulfotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within catecholamine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    sulfotransferase family 1E member 1
    Names
    sulfotransferase family 1E, estrogen-preferring, member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044443.1 → NP_001037908.1  sulfotransferase family 1E member 1

      See identical proteins and their annotated locations for NP_001037908.1

      Status: PROVISIONAL

      Source sequence(s)
      CR760765
      UniProtKB/TrEMBL
      A0A5G3I9R3, F7DPF5, Q28HS2
      Conserved Domains (1) summary
      pfam00685
      Location:47 → 295
      Sulfotransfer_1; Sulfotransferase domain

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      33887344..33906000 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012961236.3 → XP_012816690.1  sulfotransferase family 1E member 1 isoform X2

      UniProtKB/TrEMBL
      A0A6I8RTH1, A0A8J0SLQ6
      Conserved Domains (1) summary
      pfam00685
      Location:20 → 268
      Sulfotransfer_1; Sulfotransferase domain

    2. XM_031900136.1 → XP_031755996.1  sulfotransferase family 1E member 1 isoform X1

      UniProtKB/TrEMBL
      A0A5G3I9R3, A0A803KJR4, F7DPF5
      Related
      ENSXETP00000092027.2, ENSXETT00000076769.2
      Conserved Domains (1) summary
      pfam00685
      Location:47 → 269
      Sulfotransfer_1; Sulfotransferase domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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