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    LOC6631129 homeotic protein ultrabithorax [ Drosophila virilis ]

    Gene ID: 6631129, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC6631129
    Gene description
    homeotic protein ultrabithorax
    Locus tag
    Dvir_GJ23925
    See related
    EnsemblRapid:LOC6631129
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila virilis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila
    Also known as
    Ubx; Ubx-PA; Ubx-PB; Ubx-PC; GJ23925; Dvir\Ubx; GJ23925-PA; GJ23925-PB; GJ23925-PC
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC6631129 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current DvirRS2 (GCF_003285735.1) Unplaced Scaffold NW_022587377.1 (3797665..3892091)

    NW_022587377.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116650747 Neighboring gene dynein light chain roadblock-type 1 Neighboring gene uncharacterized LOC116651007 Neighboring gene modular serine protease Neighboring gene uncharacterized LOC116651068

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022587377 Unplaced Scaffold Reference DvirRS2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Extensive conservation of sequences and chromatin structures in the bxd polycomb response element among Drosophilid species. Dellino GI, et al. Int J Dev Biol, 2002 Jan. PMID 11902674
    2. Evolutionary conservation of the structure and expression of alternatively spliced Ultrabithorax isoforms from Drosophila. Bomze HM, et al. Genetics, 1994 Mar. PMID 7911773, Free PMC Article
    3. Splits in fruitfly Hox gene complexes. Von Allmen G, et al. Nature, 1996 Mar 14. PMID 8600383
    4. Trans-splicing of the mod(mdg4) complex locus is conserved between the distantly related species Drosophila melanogaster and D. virilis. Gabler M, et al. Genetics, 2005 Feb. PMID 15520256, Free PMC Article
    5. The Drosophila microRNA iab-4 causes a dominant homeotic transformation of halteres to wings. Ronshaugen M, et al. Genes Dev, 2005 Dec 15. PMID 16357215, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Antagonistic roles for ubx and Antp in regulating segment-specific apoptosis of differentiated motoneurons in the Drosophila embryonic central nervous system are reported.
      Title: Antagonistic roles for Ultrabithorax and Antennapedia in regulating segment-specific apoptosis of differentiated motoneurons in the Drosophila embryonic central nervous system.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anterior/posterior pattern specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeotic protein ultrabithorax
    Names
    Dvir\GJ23925
    Dvir\GJ23925-PA
    Dvir\GJ23925-PB
    Dvir\GJ23925-PC
    Dvir\Ubx-PA
    Dvir\Ubx-PB
    Dvir\Ubx-PC
    dvir_GLEANR_9245
    ultrabithorax

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila virilis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference DvirRS2

    Genomic

    1. NW_022587377.1 Reference DvirRS2

      Range
      3797665..3892091
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015171980.2 → XP_015027466.1  homeotic protein ultrabithorax isoform X1

      UniProtKB/TrEMBL
      Q6VPU7
      Related
      XP_015027466.1, XM_015171980.2
      Conserved Domains (1) summary
      pfam00046
      Location:296 → 348
      Homeobox; Homeobox domain

    2. XM_002053469.3 → XP_002053505.1  homeotic protein ultrabithorax isoform X2

      See identical proteins and their annotated locations for XP_002053505.1

      UniProtKB/TrEMBL
      B4LYU8
      Related
      XP_002053505.1, XM_002053469.3
      Conserved Domains (1) summary
      pfam00046
      Location:287 → 339
      Homeobox; Homeobox domain

    3. XM_015171981.2 → XP_015027467.1  homeotic protein ultrabithorax isoform X3

      UniProtKB/TrEMBL
      A0A0Q9WG69
      Related
      XP_015027467.1, XM_015171981.2
      Conserved Domains (1) summary
      pfam00046
      Location:270 → 322
      Homeobox; Homeobox domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q24703.1 GenPept UniProtKB/Swiss-Prot:Q24703

    Gene LinkOut

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    Research Materials