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    snoRNA:Psi28S-1192d [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 5740647, updated on 22-Aug-2024

    Summary

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    Official Symbol
    snoRNA:Psi28S-1192dprovided by FlyBase
    Primary source
    FLYBASE:FBgn0082998
    Locus tag
    Dmel_CR34594
    See related
    AllianceGenome:FB:FBgn0082998
    Gene type
    ncRNA
    RNA name
    snoRNA
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    chrX:16977850..16978043; CR34594; Dmel\CR34594; psi28S-1192d; Psi28S-1192d
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    Genomic context

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    See snoRNA:Psi28S-1192d in Genome Data Viewer
    Location:
    15E5-15E5; 1-57 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (17143934..17144068, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (17037967..17038101, complement)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene meiotic 218 Neighboring gene meiotic 217 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Ribosomal protein S5a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Different expression strategy: multiple intronic gene clusters of box H/ACA snoRNA in Drosophila melanogaster. Huang ZP, et al. J Mol Biol, 2004 Aug 13. PMID 15288778
    2. Structure-based whole-genome realignment reveals many novel noncoding RNAs. Will S, et al. Genome Res, 2013 Jun. PMID 23296921, Free PMC Article
    3. Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species. Sanfilippo P, et al. Genome Biol, 2017 Nov 30. PMID 29191225, Free PMC Article
    4. The many landscapes of recombination in Drosophila melanogaster. Comeron JM, et al. PLoS Genet, 2012. PMID 23071443, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    • snoRNA:Psi28S-1192d-RA; Dmel\snoRNA:Psi28S-1192d-RA; CR34594-RA; Dmel\CR34594-RA

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      17143934..17144068 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_003736.1 RNA Sequence

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials