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    plekhm3 pleckstrin homology domain containing, family M, member 3 [ Danio rerio (zebrafish) ]

    Gene ID: 571507, updated on 12-Sep-2024

    Summary

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    Official Symbol
    plekhm3provided by ZNC
    Official Full Name
    pleckstrin homology domain containing, family M, member 3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070912-382
    See related
    Ensembl:ENSDARG00000030633 AllianceGenome:ZFIN:ZDB-GENE-070912-382
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:dkey-159b16.1
    Summary
    Orthologous to human PLEKHM3 (pleckstrin homology domain containing M3). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See plekhm3 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (28140170..28207857)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (28329412..28397114)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel, subfamily H (eag-related), member 3 Neighboring gene isocitrate dehydrogenase (NADP(+)) 1 Neighboring gene cyclin Y-like 1 Neighboring gene frizzled class receptor 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    pleckstrin homology domain-containing family M member 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      28140170..28207857
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001919445.6 → XP_001919480.2  pleckstrin homology domain-containing family M member 3

      UniProtKB/TrEMBL
      A0A8M1QQJ2, F1R282
      Related
      ENSDARP00000046879.6, ENSDART00000046880.9
      Conserved Domains (3) summary
      pfam00169
      Location:307 → 403
      PH; PH domain
      pfam13901
      Location:481 → 681
      zf-RING_9; Putative zinc-RING and/or ribbon
      cl17171
      Location:309 → 399
      PH-like; Pleckstrin homology-like domain

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395283.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      193846..255956
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021474190.2 → XP_021329865.1  pleckstrin homology domain-containing family M member 3

      UniProtKB/TrEMBL
      B0UYC9
      Conserved Domains (2) summary
      pfam13901
      Location:482 → 679
      zf-RING_9; Putative zinc-RING and/or ribbon
      cl17171
      Location:309 → 399
      PH-like; Pleckstrin homology-like domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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