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    rcn2 reticulocalbin 2 [ Danio rerio (zebrafish) ]

    Gene ID: 571340, updated on 2-Nov-2024

    Summary

    Official Symbol
    rcn2provided by ZNC
    Official Full Name
    reticulocalbin 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050706-62
    See related
    Ensembl:ENSDARG00000039378 AllianceGenome:ZFIN:ZDB-GENE-050706-62
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:110594; si:dkey-24l11.6
    Summary
    Predicted to enable calcium ion binding activity. Predicted to be active in endoplasmic reticulum. Orthologous to human RCN2 (reticulocalbin 2). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
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    Genomic context

    See rcn2 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (26967333..26977886, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (26984955..26995557, complement)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene tetraspanin 3a Neighboring gene proline-serine-threonine phosphatase interacting protein 1a Neighboring gene uncharacterized LOC137488287 Neighboring gene phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Clone Names

    • MGC110594

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables calcium ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030263.2NP_001025434.2  reticulocalbin-2 precursor

      Status: VALIDATED

      Source sequence(s)
      BX470164
      Related
      ENSDARP00000115356.2, ENSDART00000147823.3

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      26967333..26977886 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395030.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      151778..163130 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395342.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      491467..502020 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)