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    si:ch73-266f23.4 si:ch73-266f23.4 [ Danio rerio (zebrafish) ]

    Gene ID: 571254, updated on 17-Aug-2024

    Summary

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    Official Symbol
    si:ch73-266f23.4provided by ZNC
    Official Full Name
    si:ch73-266f23.4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-161017-15
    See related
    Ensembl:ENSDARG00000105713 AllianceGenome:ZFIN:ZDB-GENE-161017-15
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    all
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    Genomic context

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    See si:ch73-266f23.4 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (73550323..73562142, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (71908747..71920613, complement)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene gastrula zinc finger protein XlCGF57.1-like Neighboring gene gastrula zinc finger protein XlCGF57.1-like Neighboring gene zinc finger protein 1015 Neighboring gene zinc finger protein 585A-like Neighboring gene si:ch211-165i18.2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    gastrula zinc finger protein XlCGF57.1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      73550323..73562142 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_694825.9 → XP_699917.3  gastrula zinc finger protein XlCGF57.1-like

      UniProtKB/TrEMBL
      A0A1L1QZL6, A0A8N7TER3
      Related
      ENSDARP00000143192.1, ENSDART00000174096.2
      Conserved Domains (4) summary
      COG5048
      Location:53 → 425
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:106 → 126
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:105 → 126
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:146 → 171
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein Strain
    Heading Accession and Version

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