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    si:dkey-122a22.2 si:dkey-122a22.2 [ Danio rerio (zebrafish) ]

    Gene ID: 568911, updated on 2-Nov-2024

    Summary

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    Official Symbol
    si:dkey-122a22.2provided by ZNC
    Official Full Name
    si:dkey-122a22.2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-110411-93
    See related
    Ensembl:ENSDARG00000095821 AllianceGenome:ZFIN:ZDB-GENE-110411-93
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be located in membrane. Predicted to be active in endoplasmic reticulum. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See si:dkey-122a22.2 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (43766009..43814771)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (43818548..43870983)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103908977 Neighboring gene oxidation resistance 1a Neighboring gene uncharacterized LOC110438001 Neighboring gene zinc finger protein, FOG family member 2a Neighboring gene uncharacterized LOC137487969

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Expression profiling and functional characterization of the duplicated Oxr1b gene in zebrafish. Xu H, et al. Comp Biochem Physiol Part D Genomics Proteomics, 2021 Sep. PMID 34111665
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein si:dkey-122a22.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      43766009..43814771
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009292612.3 → XP_009290887.1  uncharacterized protein si:dkey-122a22.2 isoform X2

      UniProtKB/TrEMBL
      A0A8M3AQZ6
      Conserved Domains (1) summary
      COG0596
      Location:31 → 331
      MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]

    2. XM_692272.10 → XP_697364.4  uncharacterized protein si:dkey-122a22.2 isoform X1

      UniProtKB/TrEMBL
      A0A8N7TEJ7, F8W4T1
      Related
      ENSDARP00000124148.1, ENSDART00000149154.2
      Conserved Domains (1) summary
      COG0596
      Location:77 → 377
      MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]
    Nucleotide Protein Strain
    Heading Accession and Version

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