zzz3 zinc finger, ZZ-type containing 3 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zzz3provided by ZNC
Official Full Name: zinc finger, ZZ-type containing 3provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-6450
See related: Ensembl:ENSDARG00000077581 AllianceGenome:ZFIN:ZDB-GENE-030131-6450
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fj98c02; wu:fj98c02; si:ch211-284g18.3
Summary: Predicted to enable zinc ion binding activity. Predicted to be part of SAGA-type complex. Orthologous to human ZZZ3 (zinc finger ZZ-type containing 3). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 2

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	2	NC_007113.7 (8779149..8840889)
105	previous assembly	GRCz10 (GCF_000002035.5)	2	NC_007113.6 (8980927..9042886)

Chromosome 2 - NC_007113.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of SAGA-type complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: ZZ-type zinc finger-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001100027.1 → NP_001093497.1 ZZ-type zinc finger-containing protein 3

See identical proteins and their annotated locations for NP_001093497.1

Status: PROVISIONAL

Source sequence(s)

BX649634, CR450828

UniProtKB/TrEMBL

A0A8M1NF87, A5PMR0

Conserved Domains (3) summary

smart00717
Location:624 → 674

SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

pfam00249
Location:624 → 671

Myb_DNA-binding; Myb-like DNA-binding domain

cl00295
Location:789 → 839

ZZ; Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have ...

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007113.7 Reference GRCz11 Primary Assembly

Range

8779149..8840889

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005163282.5 → XP_005163339.1 ZZ-type zinc finger-containing protein 3 isoform X1

See identical proteins and their annotated locations for XP_005163339.1

UniProtKB/TrEMBL

A0A8M1NF87, A5PMR0

Related

ENSDARP00000101210.1, ENSDART00000114471.4

Conserved Domains (3) summary

smart00717
Location:624 → 674

SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

pfam00249
Location:624 → 671

Myb_DNA-binding; Myb-like DNA-binding domain

cl00295
Location:789 → 839

ZZ; Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have ...