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    zmp:0000001200 zmp:0000001200 [ Danio rerio (zebrafish) ]

    Gene ID: 566175, updated on 2-Nov-2024

    Summary

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    Official Symbol
    zmp:0000001200provided by ZNC
    Official Full Name
    zmp:0000001200provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-140106-160
    See related
    Ensembl:ENSDARG00000114086 AllianceGenome:ZFIN:ZDB-GENE-140106-160
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    dock9
    Summary
    Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within small GTPase-mediated signal transduction. Predicted to be located in membrane. Orthologous to human DOCK9 (dedicator of cytokinesis 9). [provided by Alliance of Genome Resources, Nov 2024]
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    all
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    Genomic context

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    See zmp:0000001200 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    49
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (1072788..1136670)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (1246388..1288410)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene ras-related protein Rap-2a Neighboring gene FERM, ARHGEF and pleckstrin domain-containing protein 1 Neighboring gene solute carrier family 15 member 1a Neighboring gene serine/threonine kinase 24a (STE20 homolog, yeast)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within small GTPase-mediated signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    dedicator of cytokinesis protein 9
    Names
    dedicator of cytokinesis 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      1072788..1136670
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068223516.1 → XP_068079617.1  dedicator of cytokinesis protein 9

      Related
      ENSDARP00000148652.1, ENSDART00000192186.1
    Nucleotide Protein Strain
    Heading Accession and Version

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