lrig3 leucine-rich repeats and immunoglobulin-like domains 3 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: lrig3provided by ZNC
Official Full Name: leucine-rich repeats and immunoglobulin-like domains 3provided by ZNC
Primary source: ZFIN:ZDB-GENE-130530-866
See related: Ensembl:ENSDARG00000079363 AllianceGenome:ZFIN:ZDB-GENE-130530-866
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Is expressed in brain; eye; pharyngeal arch 3-7; presumptive shield; and shield. Orthologous to human LRIG3 (leucine rich repeats and immunoglobulin like domains 3). [provided by Alliance of Genome Resources, Apr 2022]
Annotation information: Annotation category: partial on reference assembly
Orthologs: human mouse all
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Genomic context

Location:: chromosome: Un

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	Unplaced Scaffold	NW_018394371.1 (11448..11796, complement)
106	current	GRCz11 (GCF_000002035.6)	Unplaced Scaffold	NW_018394374.1 (8064..18877)
106	current	GRCz11 (GCF_000002035.6)	Unplaced Scaffold	NW_018394385.1 (10718..11123)
105	previous assembly	GRCz10 (GCF_000002035.5)	15	NC_007126.6 (2978599..3011805)

NW_018394385.1 Genomic Context describing neighboring genes

NW_018394374.1 Genomic Context describing neighboring genes

NW_018394371.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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General protein information

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Preferred Names: leucine-rich repeats and immunoglobulin-like domains protein 3

Names: zmp:0000000863

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001110347.1 → NP_001103817.1 leucine-rich repeats and immunoglobulin-like domains protein 3 precursor

See identical proteins and their annotated locations for NP_001103817.1

Status: PROVISIONAL

Source sequence(s)

EU126152

Related

ENSDARP00000099511.4, ENSDART00000110613.4

Conserved Domains (9) summary

cd00096
Location:505 → 581

Ig; Immunoglobulin domain

cd05763
Location:612 → 686

Ig_1; Subgroup of the immunoglobulin (Ig) superfamily

smart00408
Location:703 → 766

IGc2; Immunoglobulin C-2 Type

cd00116
Location:251 → 435

LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

pfam07679
Location:595 → 685

I-set; Immunoglobulin I-set domain

sd00031
Location:64 → 87

LRR_1; leucine-rich repeat [structural motif]

sd00033
Location:111 → 134

LRR_RI; leucine-rich repeat [structural motif]

pfam13855
Location:301 → 360

LRR_8; Leucine rich repeat

cl15307
Location:435 → 483

TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain