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    dip2ca disco-interacting protein 2 homolog Ca [ Danio rerio (zebrafish) ]

    Gene ID: 563890, updated on 17-Sep-2024

    Summary

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    Official Symbol
    dip2caprovided by ZNC
    Official Full Name
    disco-interacting protein 2 homolog Caprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-031118-39
    See related
    Ensembl:ENSDARG00000062154 AllianceGenome:ZFIN:ZDB-GENE-031118-39
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    dip2c; wu:fj36a06; wu:fq31a07; wu:cegs2569; si:dkey-181h23.2
    Summary
    Is expressed in blood; optic stalk; somite; and ventral mesoderm. Orthologous to human DIP2C (disco interacting protein 2 homolog C). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See dip2ca in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    39
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (27023342..27224650)
    105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (26944118..27145491)

    Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene STAG1 cohesin complex component b Neighboring gene La ribonucleoprotein 4B Neighboring gene uncharacterized LOC101883694 Neighboring gene zinc finger, MYND-type containing 11 Neighboring gene vasoactive intestinal peptide receptor 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Newly-identified receptors for peptide histidine-isoleucine and GHRH-like peptide in zebrafish help to elucidate the mammalian secretin superfamily. Wu S, et al. J Mol Endocrinol, 2008 Nov. PMID 18757498
    2. Evolutionary evidence of tumor necrosis factor super family members in the Japanese pufferfish (Takifugu rubripes): Comprehensive genomic identification and expression analysis. Biswas G, et al. Mar Genomics, 2015 Aug. PMID 25792259
    3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    disco-interacting protein 2 homolog C
    Names
    DIP2 disco-interacting protein 2 homolog C
    DIP2 disco-interacting protein 2 homolog Ca

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007135.7 Reference GRCz11 Primary Assembly

      Range
      27023342..27224650
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009297519.4 → XP_009295794.1  disco-interacting protein 2 homolog C isoform X1

      UniProtKB/TrEMBL
      A0A8M3APB7
      Related
      ENSDARP00000083974.5, ENSDART00000089541.6
      Conserved Domains (5) summary
      cd05905
      Location:381 → 945
      Dip2; Disco-interacting protein 2 (Dip2)
      COG0318
      Location:357 → 948
      CaiC; Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Lipid transport and metabolism, Secondary metabolites biosynthesis, transport and catabolism]
      pfam00501
      Location:1016 → 1500
      AMP-binding; AMP-binding enzyme
      pfam06464
      Location:6 → 118
      DMAP_binding; DMAP1-binding Domain
      cl17068
      Location:1035 → 1595
      AFD_class_I; Adenylate forming domain, Class I superfamily

    2. XM_005162808.5 → XP_005162865.1  disco-interacting protein 2 homolog C isoform X2

      UniProtKB/TrEMBL
      A0A8M2B9W7
      Related
      ENSDARP00000119049.2, ENSDART00000137212.4
      Conserved Domains (5) summary
      cd05905
      Location:381 → 945
      Dip2; Disco-interacting protein 2 (Dip2)
      COG0318
      Location:357 → 948
      CaiC; Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Lipid transport and metabolism, Secondary metabolites biosynthesis, transport and catabolism]
      pfam00501
      Location:1016 → 1490
      AMP-binding; AMP-binding enzyme
      pfam06464
      Location:6 → 118
      DMAP_binding; DMAP1-binding Domain
      cl17068
      Location:1035 → 1585
      AFD_class_I; Adenylate forming domain, Class I superfamily

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395178.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      3686..83643
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021473804.2 → XP_021329479.1  disco-interacting protein 2 homolog C isoform X3

      UniProtKB/TrEMBL
      A0A8M9PX90
      Conserved Domains (2) summary
      cd05905
      Location:170 → 734
      Dip2; Disco-interacting protein 2 (Dip2)
      cl17068
      Location:824 → 1384
      AFD_class_I; Adenylate forming domain, Class I superfamily

    2. XM_021473806.2 → XP_021329481.1  disco-interacting protein 2 homolog C isoform X5

      UniProtKB/TrEMBL
      A0A8M9Q441
      Conserved Domains (2) summary
      cd05905
      Location:170 → 734
      Dip2; Disco-interacting protein 2 (Dip2)
      cl17068
      Location:824 → 1374
      AFD_class_I; Adenylate forming domain, Class I superfamily

    3. XM_021473805.2 → XP_021329480.1  disco-interacting protein 2 homolog C isoform X4

      UniProtKB/TrEMBL
      A0A8M9Q886
      Conserved Domains (2) summary
      cd05905
      Location:170 → 734
      Dip2; Disco-interacting protein 2 (Dip2)
      cl17068
      Location:821 → 1381
      AFD_class_I; Adenylate forming domain, Class I superfamily
    Nucleotide Protein
    Heading Accession and Version

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