si:ch211-243j20.2 si:ch211-243j20.2 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: si:ch211-243j20.2provided by ZNC
Official Full Name: si:ch211-243j20.2provided by ZNC
Primary source: ZFIN:ZDB-GENE-041014-345
See related: Ensembl:ENSDARG00000033916 AllianceGenome:ZFIN:ZDB-GENE-041014-345
Gene type: protein coding
RefSeq status: MODEL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to enable ATP binding activity and uridine kinase activity. Predicted to be involved in CTP salvage and UMP salvage. Predicted to act upstream of or within nucleoside metabolic process and phosphorylation. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

See si:ch211-243j20.2 in Genome Data Viewer

Location:: chromosome: 20

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	20	NC_007131.7 (38620681..38670700)
105	previous assembly	GRCz10 (GCF_000002035.5)	20	NC_007131.6 (38717802..38767821)

Chromosome 20 - NC_007131.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables kinase activity	IEA Inferred from Electronic Annotation more info
enables nucleotide binding	IEA Inferred from Electronic Annotation more info
enables transferase activity	IEA Inferred from Electronic Annotation more info
enables uridine kinase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in CTP salvage	IEA Inferred from Electronic Annotation more info
involved_in UMP salvage	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: uridine-cytidine kinase-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007131.7 Reference GRCz11 Primary Assembly

Range

38620681..38670700

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_002665748.3 → XP_002665794.1 uridine-cytidine kinase-like 1 isoform X2

UniProtKB/TrEMBL

A0A8M1RKY9, E9QGS0

Related

ENSDARP00000045849.4, ENSDART00000045850.6

Conserved Domains (3) summary

COG0572
Location:93 → 300

Udk; Uridine kinase [Nucleotide transport and metabolism]

cd02023
Location:94 → 293

UMPK; Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, ...

pfam14681
Location:323 → 526

UPRTase; Uracil phosphoribosyltransferase
XM_021468661.1 → XP_021324336.1 uridine-cytidine kinase-like 1 isoform X1

UniProtKB/TrEMBL

A0A8M9PQ05

Conserved Domains (2) summary

cd02023
Location:94 → 293

UMPK; Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, ...

pfam14681
Location:324 → 527

UPRTase; Uracil phosphoribosyltransferase
XM_009294901.3 → XP_009293176.1 uridine-cytidine kinase-like 1 isoform X3

See identical proteins and their annotated locations for XP_009293176.1

UniProtKB/TrEMBL

A0A8M3ALR2

Conserved Domains (1) summary

cd02023
Location:94 → 293

UMPK; Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, ...
XM_021468662.1 → XP_021324337.1 uridine-cytidine kinase-like 1 isoform X3

UniProtKB/TrEMBL

A0A8M3ALR2

Conserved Domains (1) summary

cd02023
Location:94 → 293

UMPK; Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, ...