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    lgals8a galectin 8a [ Danio rerio (zebrafish) ]

    Gene ID: 563573, updated on 2-Nov-2024

    Summary

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    Official Symbol
    lgals8aprovided by ZNC
    Official Full Name
    galectin 8aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040724-22
    See related
    Ensembl:ENSDARG00000037066 AllianceGenome:ZFIN:ZDB-GENE-040724-22
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-199l3.2
    Summary
    Predicted to enable carbohydrate binding activity. Predicted to be active in cytoplasm. Orthologous to human LGALS8 (galectin 8). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See lgals8a in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (4793686..4814222)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (4750772..4771292)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene adenylate kinase 7a Neighboring gene galactosylceramidase a Neighboring gene zinc finger DHHC-type palmitoyltransferase 14 Neighboring gene transmembrane protein 242

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Red LED light treatment promotes cognitive learning through up-regulation of trpm4 in zebrafish. You MS, et al. J Photochem Photobiol B, 2020 Dec. PMID 33186875
    2. Galectins in channel catfish, Ictalurus punctatus: Characterization and expression profiling in mucosal tissues. Zhou S, et al. Fish Shellfish Immunol, 2016 Feb. PMID 26767746
    3. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables carbohydrate binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    galectin-8; uncharacterized protein LOC563573
    Names
    lgals8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      4793686..4814222
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003200667.6 → XP_003200715.1  galectin-8 isoform X1

      UniProtKB/TrEMBL
      A0A8M1RJC6, X1WD11
      Related
      ENSDARP00000128108.2, ENSDART00000153486.3
      Conserved Domains (1) summary
      smart00908
      Location:23 → 147
      Gal-bind_lectin; Galactoside-binding lectin

    2. XM_005160353.5 → XP_005160410.1  galectin-8 isoform X2

      UniProtKB/TrEMBL
      A0A8M2B768, F1QIE5
      Related
      ENSDARP00000053874.3, ENSDART00000053875.5
      Conserved Domains (1) summary
      smart00908
      Location:23 → 147
      Gal-bind_lectin; Galactoside-binding lectin
    Nucleotide Protein
    Heading Accession and Version

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