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    shkbp1 SH3KBP1 binding protein 1 [ Danio rerio (zebrafish) ]

    Gene ID: 562395, updated on 12-Sep-2024

    Summary

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    Official Symbol
    shkbp1provided by ZNC
    Official Full Name
    SH3KBP1 binding protein 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-130415-1
    See related
    Ensembl:ENSDARG00000105050 AllianceGenome:ZFIN:ZDB-GENE-130415-1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Orthologous to human SHKBP1 (SH3KBP1 binding protein 1). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See shkbp1 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (48953813..48972987)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (48959039..48977961)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1, regulatory subunit 37 Neighboring gene uncharacterized LOC100002134 Neighboring gene estrogen-related receptor delta Neighboring gene latent transforming growth factor beta binding protein 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within protein homooligomerization IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    SH3KBP1-binding protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      48953813..48972987
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001920900.8 → XP_001920935.4  SH3KBP1-binding protein 1

      UniProtKB/TrEMBL
      A0A8M1QHH8, E7FFI2
      Related
      ENSDARP00000137217.1, ENSDART00000158104.2
      Conserved Domains (3) summary
      smart00225
      Location:6 → 96
      BTB; Broad-Complex, Tramtrack and Bric a brac
      COG2319
      Location:308 → 569
      WD40; WD40 repeat [General function prediction only]
      pfam02214
      Location:8 → 100
      BTB_2; BTB/POZ domain
    Nucleotide Protein
    Heading Accession and Version

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